Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8237

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8236: 16604 - Interpro Fungal protein of unknown function (DUF1770) 0, at 733012 to 733833 16604 mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734227 to 736264 16605 mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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733,232 - 16604 mRNA_8236 0.27 1.1
733,239 - 16604 mRNA_8236 0.28 -0.5
733,659 - 16604 mRNA_8236 0.79 -1.1
733,685 - 16604 mRNA_8236 0.82 -0.3
733,692 - 16604 mRNA_8236 0.83 0.2
733,692 - 16604 mRNA_8236 0.83 -0.6
733,701 + 16604 mRNA_8236 0.84 -0.1
733,725 - 16604 mRNA_8236 0.87 0.7
733,835 + -2.4
733,837 + -0.6
734,250 + -1.8
734,251 - -1.3
734,272 + 2.1
734,426 + 1.6
734,459 + 16605 mRNA_8237 0.11 1.2
734,581 + 16605 mRNA_8237 0.17 0.4
734,656 - 16605 mRNA_8237 0.21 1.3
734,679 + 16605 mRNA_8237 0.22 -0.7
734,986 + 16605 mRNA_8237 0.37 -0.8
735,132 - 16605 mRNA_8237 0.44 -0.1
735,566 + 16605 mRNA_8237 0.66 0.8
735,704 + 16605 mRNA_8237 0.72 -0.8
735,822 + 16605 mRNA_8237 0.78 0.5
735,983 - 16605 mRNA_8237 0.86 -0.0
736,010 - 16605 mRNA_8237 0.87 0.4
736,011 + 16605 mRNA_8237 0.88 1.4
736,019 + 16605 mRNA_8237 0.88 0.4
736,025 + 16605 mRNA_8237 0.88 0.4
736,137 - 0.7
736,148 + -0.4
736,169 + 0.4
736,172 - 1.7
736,224 - -0.6
736,309 - 2.1
736,315 + 1.3
736,324 - 0.7
736,329 + -1.2
736,329 - 1.0
736,334 - 0.7
736,350 - -0.6
736,351 + 0.4
736,457 + 0.3
736,479 - 0.9
736,487 - 2.2
736,488 - -0.0
736,488 + 0.0
736,490 - -2.6
736,498 + 0.7
736,500 - 0.2
736,501 - -0.8
736,501 + 0.2
736,502 + -0.2
736,502 + -0.5
736,502 + -1.1
736,503 + -1.4
736,504 - 0.9
736,505 + -0.7
736,505 - -0.5
736,506 - 1.2
736,508 + 0.7
736,510 + 0.0
736,511 - -0.3
736,511 - -0.3
736,544 - -0.8
736,545 + -0.1
736,546 - -0.2
736,566 + 0.0
736,581 + -0.2
736,663 - -0.4
736,675 + -0.7
736,686 + -0.1
736,714 - -0.5
736,714 + 0.6
736,725 - -0.0
736,731 - 0.2
736,745 + -0.6
736,857 - 0.0
736,863 + 1.5
736,866 - 1.7
736,881 + 0.2
737,003 - 16606 mRNA_8238 0.12 2.0
737,004 - 16606 mRNA_8238 0.12 -0.3
737,005 + 16606 mRNA_8238 0.13 1.4
737,012 - 16606 mRNA_8238 0.13 -0.0
737,036 - 16606 mRNA_8238 0.15 1.1