Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8190

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8189: 16557 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 629881 to 631255 16557 mRNA_8190: 16558 - KOG2757 Mannose-6-phosphate isomerase, at 631383 to 634543 16558 mRNA_8191: 16559 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 634694 to 637536 16559

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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630,454 - 16557 mRNA_8189 0.42 -0.2
630,461 + 16557 mRNA_8189 0.42 -0.3
630,464 + 16557 mRNA_8189 0.42 1.8
630,605 - 16557 mRNA_8189 0.53 -1.3
630,864 - 16557 mRNA_8189 0.71 0.9
630,892 + 16557 mRNA_8189 0.74 -1.4
631,003 - 16557 mRNA_8189 0.82 0.2
631,168 - 1.3
631,193 + -0.6
631,193 + -1.4
631,194 + 0.3
631,319 - 0.5
631,319 - -1.4
631,331 - -0.0
631,337 + -0.1
631,358 - -0.6
631,632 - 0.8
632,238 + 16558 mRNA_8190 0.27 -0.5
632,339 - 16558 mRNA_8190 0.30 0.2
632,681 - 16558 mRNA_8190 0.41 2.6
632,684 + 16558 mRNA_8190 0.41 -0.2
632,685 + 16558 mRNA_8190 0.41 -0.4
632,689 - 16558 mRNA_8190 0.41 0.2
632,699 + 16558 mRNA_8190 0.42 -0.7
632,719 - 16558 mRNA_8190 0.42 -0.3
632,760 + 16558 mRNA_8190 0.44 -0.4
632,830 - 16558 mRNA_8190 0.46 -0.1
632,892 - 16558 mRNA_8190 0.48 -2.6
633,284 + 16558 mRNA_8190 0.60 1.1
633,580 - 16558 mRNA_8190 0.70 -0.1
633,614 + 16558 mRNA_8190 0.71 0.5
634,037 - 16558 mRNA_8190 0.84 0.8
634,375 - -0.8
634,622 - 0.0
634,625 + 0.1
634,631 + -1.7
634,636 + 0.5
634,659 - -0.5
634,671 + 1.2
634,679 + 1.6
634,755 + 0.8
634,795 + 0.7
634,800 + 0.6
634,962 + 1.0
635,069 - 16559 mRNA_8191 0.13 -0.4
635,086 - 16559 mRNA_8191 0.14 0.1
635,245 - 16559 mRNA_8191 0.19 -0.2
635,382 + 16559 mRNA_8191 0.24 1.1