Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8156

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8155: 16523 - K15361 WDR48, UAF1 WD repeat-containing protein 48, at 541110 to 545271 16523 mRNA_8156: 16524 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 545872 to 548769 16524 mRNA_8157: 16525 - ProSiteProfiles-DOMON domain profile.-PS50836,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 549657 to 551853 16525

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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544,872 - -1.2
544,880 + -0.7
545,039 - 0.3
545,180 - -0.1
545,342 + 0.3
545,459 + -0.1
545,470 + -0.4
545,490 - -1.3
545,649 - -0.5
545,710 + 1.6
545,778 - 0.6
545,784 - -0.3
545,786 - 0.4
545,905 + 1.0
546,099 + -1.2
546,251 + 16524 mRNA_8156 0.13 0.0
546,502 + 16524 mRNA_8156 0.22 -2.3
546,943 + 16524 mRNA_8156 0.37 0.1
547,110 + 16524 mRNA_8156 0.43 1.5
547,129 - 16524 mRNA_8156 0.43 -0.1
547,146 - 16524 mRNA_8156 0.44 1.1
547,175 - 16524 mRNA_8156 0.45 0.3
547,216 - 16524 mRNA_8156 0.46 1.9
547,394 - 16524 mRNA_8156 0.53 0.6
547,486 - 16524 mRNA_8156 0.56 1.1
547,536 - 16524 mRNA_8156 0.57 -0.3
547,579 - 16524 mRNA_8156 0.59 -0.1
547,681 + 16524 mRNA_8156 0.62 1.8
547,724 + 16524 mRNA_8156 0.64 0.9
548,131 - 16524 mRNA_8156 0.78 -0.1
548,244 - 16524 mRNA_8156 0.82 -0.3
548,527 + 0.4
548,561 + -0.4
548,562 - 0.9
548,581 + 0.9
548,630 - 0.4
548,792 - -0.2
548,801 + 0.8
548,823 + 0.8
548,843 - 1.6
548,846 - 0.7
548,847 - -0.2
548,850 + 2.7
548,860 + 2.2
548,863 + 1.1
548,865 + -0.3
548,940 - 1.3
548,961 - 0.3
548,963 - 0.6
548,964 - -0.6
548,966 + 1.1
548,973 - -1.0
548,974 - 3.4
548,987 + 0.7
548,990 + -1.4
548,992 + 0.9
548,995 - 1.1
549,025 - -0.8
549,025 - 0.4
549,027 + -1.3
549,029 - 1.2
549,030 - 1.4
549,036 + 0.2
549,044 + -1.3
549,045 + 0.4
549,059 - 1.3
549,064 + 1.3
549,064 + 0.9
549,108 + -0.4
549,109 + -0.2
549,109 - 0.7
549,140 - 1.6
549,143 - 0.3
549,207 + 3.5
549,230 + 1.7
549,275 + 1.6
549,276 + 0.3
549,285 + 0.7
549,286 - 2.3
549,287 - 1.6
549,291 - 1.7
549,293 - 0.7
549,293 - 0.8
549,297 - -2.3
549,298 - -0.1
549,299 + 1.8
549,299 - -1.6
549,300 + 0.3
549,302 - -0.9
549,314 - 1.0
549,323 + 3.1
549,324 + 0.7
549,332 - 1.0
549,333 - 0.8
549,333 - -1.2
549,334 + 0.3
549,335 + 0.2
549,341 + -0.1
549,346 + 0.9
549,349 + 1.4
549,361 + -0.1
549,364 + 2.5
549,364 - 1.9
549,405 - -1.1
549,406 + -0.5
549,419 - -0.5
549,423 - 0.2
549,424 + 0.2
549,424 - -0.3
549,426 + -0.8
549,429 - 1.5
549,430 - 1.3
549,435 + -0.2
549,435 - -0.0
549,440 + -1.5
549,441 + 0.4
549,469 + 2.1
549,482 - 1.4
549,566 - 1.3
549,576 - -1.9
549,595 + -1.3
549,597 - 2.6
549,598 + 2.1
549,610 - 1.7
549,616 + 0.6
549,619 + 2.7
549,624 + 3.4
549,625 - -0.3
549,634 + -0.6
549,642 - -0.1
549,645 + 0.2
549,654 + 0.5
549,659 - 0.2
549,672 - 1.0
549,682 - 2.1
549,685 - -0.2
549,686 + 0.6
549,687 - 0.9
549,689 + 0.7
549,692 + -0.8
549,700 - -1.0
549,701 + 3.1
549,713 + -0.3
549,713 + 0.3
549,746 + -1.4
549,754 + 1.8