Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8153

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8152: 16520 - KOG2944 Glyoxalase, at 536656 to 537504 16520 mRNA_8153: 16521 - HMMPfam-Chalcone-flavanone isomerase-PF02431,SUPERFAMILY--SSF54626, at 537692 to 539063 16521 mRNA_8154: 16522 - HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179, at 539197 to 540895 16522

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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536,750 + 16520 mRNA_8152 0.11 1.9
537,125 - 16520 mRNA_8152 0.55 -0.3
537,241 - 16520 mRNA_8152 0.69 0.8
537,333 - 16520 mRNA_8152 0.80 1.2
537,361 - 16520 mRNA_8152 0.83 1.2
537,465 - 1.9
537,470 - -1.7
537,619 - -0.1
537,622 + -0.2
537,641 - 0.2
537,645 - 1.4
537,649 + -1.0
537,652 - 0.3
537,657 - 0.3
537,667 + 0.4
537,668 - -0.8
537,672 - -1.3
537,692 + 0.5
537,695 - 0.2
537,720 - -0.8
537,728 + -0.5
537,728 + -0.0
537,730 - -0.4
537,731 + 0.4
537,843 - 16521 mRNA_8153 0.11 0.4
538,004 + 16521 mRNA_8153 0.23 0.9
538,014 - 16521 mRNA_8153 0.23 -0.2
538,024 + 16521 mRNA_8153 0.24 -1.7
538,384 - 16521 mRNA_8153 0.50 -1.6
538,565 - 16521 mRNA_8153 0.64 -0.5
538,843 - 16521 mRNA_8153 0.84 -1.3
538,845 + 16521 mRNA_8153 0.84 0.2
538,847 + 16521 mRNA_8153 0.84 -0.1
538,853 + 16521 mRNA_8153 0.85 -1.1
538,855 - 16521 mRNA_8153 0.85 -1.7
538,861 + 16521 mRNA_8153 0.85 0.8
538,887 + 16521 mRNA_8153 0.87 -0.3
539,135 + -0.4
539,158 - 0.3
539,164 - -0.0
539,285 + 0.4
539,297 - -1.5
539,303 + -1.6
539,305 + 1.1
539,462 - 16522 mRNA_8154 0.16 -1.4
539,472 + 16522 mRNA_8154 0.16 0.1
539,478 + 16522 mRNA_8154 0.17 -2.0
539,730 - 16522 mRNA_8154 0.31 2.3