Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8151

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8150: 16518 - K11135 PINX1 Pin2-interacting protein X1, at 530579 to 532165 16518 mRNA_8151: 16519 - K19846 SPA2 protein SPA2, at 532598 to 536503 16519 mRNA_8152: 16520 - KOG2944 Glyoxalase, at 536656 to 537504 16520

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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532,258 - 0.7
532,388 - 0.8
532,392 - 0.9
532,393 + -1.1
532,399 + 2.0
532,407 + -1.4
532,493 - -0.8
532,532 + -0.7
532,536 + 2.1
532,538 - 1.9
532,538 + -0.7
532,543 + 1.4
532,544 - 0.5
532,592 - -1.0
532,680 + 0.4
532,682 - 0.6
532,687 - 1.3
532,696 + -0.2
532,696 + 0.3
532,825 + 0.7
532,836 + 0.1
532,844 - 0.5
532,853 + 0.7
533,110 - 16519 mRNA_8151 0.13 -2.1
533,181 - 16519 mRNA_8151 0.15 2.3
533,271 + 16519 mRNA_8151 0.17 -0.1
533,392 - 16519 mRNA_8151 0.20 1.1
533,404 + 16519 mRNA_8151 0.21 -0.9
533,572 - 16519 mRNA_8151 0.25 0.0
533,580 + 16519 mRNA_8151 0.25 -0.4
534,100 + 16519 mRNA_8151 0.38 -0.0
534,143 + 16519 mRNA_8151 0.40 1.8
534,479 - 16519 mRNA_8151 0.48 -0.5
534,542 + 16519 mRNA_8151 0.50 -3.1
534,558 - 16519 mRNA_8151 0.50 -1.9
534,580 + 16519 mRNA_8151 0.51 0.1
534,631 - 16519 mRNA_8151 0.52 -2.0
535,322 - 16519 mRNA_8151 0.70 0.6
535,452 - 16519 mRNA_8151 0.73 -0.1
535,731 + 16519 mRNA_8151 0.80 -0.3
535,892 - 16519 mRNA_8151 0.84 -0.1
535,999 - 16519 mRNA_8151 0.87 0.6
536,164 + -0.9
536,750 + 16520 mRNA_8152 0.11 1.9
537,125 - 16520 mRNA_8152 0.55 -0.3
537,241 - 16520 mRNA_8152 0.69 0.8
537,333 - 16520 mRNA_8152 0.80 1.2
537,361 - 16520 mRNA_8152 0.83 1.2
537,465 - 1.9
537,470 - -1.7