Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8147

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8146: 16514 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF55753, at 523156 to 525295 16514 mRNA_8147: 16515 - HMMPfam-Enoyl-CoA hydratase/isomerase family-PF00378,SUPERFAMILY--SSF52096, at 525577 to 526736 16515 mRNA_8148: 16516 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 527058 to 528382 16516

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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524,590 - 16514 mRNA_8146 0.67 0.5
524,595 + 16514 mRNA_8146 0.67 0.9
524,890 + 16514 mRNA_8146 0.81 -0.2
524,935 - 16514 mRNA_8146 0.83 1.1
525,163 + -1.9
525,179 - 2.3
525,310 - 0.1
525,335 + -1.6
525,338 - 0.5
525,353 - -0.2
525,354 - -0.2
525,474 - -1.8
525,615 - -0.1
525,657 + 1.1
525,766 + 16515 mRNA_8147 0.16 -1.3
525,794 + 16515 mRNA_8147 0.19 -1.3
526,113 + 16515 mRNA_8147 0.46 -0.3
526,194 - 16515 mRNA_8147 0.53 -0.4
526,352 + 16515 mRNA_8147 0.67 1.1
526,530 - 16515 mRNA_8147 0.82 -1.0
526,683 - 1.9
526,712 + -0.2
526,812 - -0.4
526,814 - -1.5
526,835 - 1.0
526,835 - 0.1
526,835 + -0.0
526,850 + -0.3
526,860 - -0.7
527,471 - 16516 mRNA_8148 0.31 -0.7
527,721 + 16516 mRNA_8148 0.50 -0.6