Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8135

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8134: 16502 - K17891 ERV2 FAD-linked sulfhydryl oxidase, at 499716 to 500735 16502 mRNA_8135: 16503 - K00804 GGPS1 geranylgeranyl diphosphate synthase, type III, at 500872 to 502376 16503 mRNA_8136: 16504 - KOG0157 Cytochrome P450 CYP4/CYP19/CYP26 subfamilies, at 502588 to 504412 16504

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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500,156 - 16502 mRNA_8134 0.43 0.5
500,237 + 16502 mRNA_8134 0.51 0.7
500,362 + 16502 mRNA_8134 0.63 -0.3
500,373 - 16502 mRNA_8134 0.64 0.2
500,507 - 16502 mRNA_8134 0.78 0.6
500,514 - 16502 mRNA_8134 0.78 1.3
500,517 + 16502 mRNA_8134 0.79 -0.6
500,530 - 16502 mRNA_8134 0.80 1.4
500,532 - 16502 mRNA_8134 0.80 -0.5
500,537 + 16502 mRNA_8134 0.80 0.1
500,790 - -0.1
500,799 - -0.5
500,801 - 1.1
500,808 + -0.5
500,823 + 2.7
500,839 + -1.4
500,915 - -2.0
500,982 + -1.9
500,991 + 0.2
501,004 + -0.9
501,005 - -1.0
501,294 + 16503 mRNA_8135 0.28 -0.1
501,295 - 16503 mRNA_8135 0.28 1.9
501,317 + 16503 mRNA_8135 0.30 -1.1
501,430 + 16503 mRNA_8135 0.37 1.1
502,307 + -0.1
502,393 - -0.8
502,783 - 16504 mRNA_8136 0.11 -3.4
503,037 - 16504 mRNA_8136 0.25 -3.2
503,176 + 16504 mRNA_8136 0.32 -0.5
503,254 - 16504 mRNA_8136 0.36 0.4