Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8116

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8115: 16483 - K03868 RBX1, ROC1 RING-box protein 1, at 452309 to 453227 16483 mRNA_8116: 16484 - K00949 thiN, TPK1, THI80 thiamine pyrophosphokinase, at 453564 to 454690 16484 mRNA_8117: 16485 - K06041 kdsD, kpsF arabinose-5-phosphate isomerase, at 455080 to 456482 16485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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453,276 - -0.4
453,412 - -0.7
453,573 - 0.4
454,450 + 16484 mRNA_8116 0.79 -0.6
454,726 - 0.6
454,733 - -0.9
454,743 - -0.1
454,745 - 0.0
454,751 + -0.8
454,753 + -0.8
454,761 + 0.3
454,761 + -1.1
454,766 + -2.6
454,816 - 1.4
454,881 - -1.9
454,935 + -0.5
454,943 - -0.7
454,945 - 0.7
454,949 + -0.5
454,950 + -0.1
454,951 - 1.0
454,951 - -0.1
454,952 - -1.3
454,952 + 1.0
454,953 + -0.1
454,953 + 0.1
454,953 + -0.0
454,956 - 0.2
454,957 + -0.3
454,958 - 0.1
454,959 - -0.3
454,962 + 1.1
454,962 + 0.6
454,965 - 0.5
454,966 - -1.2
454,968 + -0.4
454,969 + -0.5
454,970 + 0.9
454,971 + 0.4
454,973 + -2.4
454,973 + -1.2
454,977 - -0.1
454,994 + -0.4
454,994 - 0.0
454,994 - 0.3
454,996 - 0.0
454,997 + -0.4
454,997 + -1.8
455,011 - -0.1
455,015 - 0.8
455,019 + 1.6
455,021 - 1.0
455,024 + -0.0
455,150 - -0.4
455,161 + 0.5
455,163 + 1.2
455,188 + 0.6
455,189 - 0.8
455,191 - -1.1
455,337 + 16485 mRNA_8117 0.18 2.4
455,592 + 16485 mRNA_8117 0.36 0.1