Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8079

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8078: 16446 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 371130 to 372195 16446 mRNA_8079: 16447 - BLAST PRMT5-domain-containing protein [Sanghuangporus baumii], at 372456 to 373383 16447 mRNA_8080: 16448 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 373552 to 376166 16448

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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371,782 - 16446 mRNA_8078 0.61 -0.2
371,802 - 16446 mRNA_8078 0.63 0.9
371,827 - 16446 mRNA_8078 0.65 -0.2
371,956 - 16446 mRNA_8078 0.77 -1.1
371,958 - 16446 mRNA_8078 0.78 -1.4
371,969 + 16446 mRNA_8078 0.79 0.1
372,096 - 0.2
372,110 + 0.6
372,267 + 0.4
372,527 + -0.5
372,675 - 16447 mRNA_8079 0.24 0.4
373,117 - 16447 mRNA_8079 0.71 0.5
373,124 + 16447 mRNA_8079 0.72 0.9
373,263 - 16447 mRNA_8079 0.87 -2.5
373,269 + 16447 mRNA_8079 0.88 -1.3
373,409 - 0.4
373,416 + 1.5
373,550 + 0.7
373,554 - 0.4
373,561 - 0.3
373,856 + 16448 mRNA_8080 0.12 0.5
374,267 - 16448 mRNA_8080 0.27 -2.1
374,292 + 16448 mRNA_8080 0.28 -0.8