Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8068

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8067: 16435 - K12399 AP3S AP-3 complex subunit sigma, at 346568 to 347476 16435 mRNA_8068: 16436 - KOG1198 Zinc-binding oxidoreductase, at 347734 to 349027 16436 mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349266 to 352237 16437

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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347,015 + 16435 mRNA_8067 0.49 -0.3
347,088 + 16435 mRNA_8067 0.57 0.4
347,286 + 16435 mRNA_8067 0.79 0.8
347,476 - -0.7
347,504 + -0.2
347,563 + -0.1
347,658 - -1.8
347,660 + -0.4
347,674 - -0.1
347,754 + 0.7
347,772 - -1.0
347,779 + -0.8
347,798 + -0.5
347,799 - -2.4
347,918 - 16436 mRNA_8068 0.14 1.1
347,920 - 16436 mRNA_8068 0.14 0.8
347,930 - 16436 mRNA_8068 0.15 1.8
347,970 + 16436 mRNA_8068 0.18 1.1
347,973 + 16436 mRNA_8068 0.18 -2.0
347,986 + 16436 mRNA_8068 0.19 0.7
348,013 + 16436 mRNA_8068 0.22 -0.5
348,258 - 16436 mRNA_8068 0.40 -0.5
348,296 + 16436 mRNA_8068 0.43 0.3
348,393 - 16436 mRNA_8068 0.51 1.9
348,858 + 16436 mRNA_8068 0.87 0.0
348,881 + 16436 mRNA_8068 0.89 0.1
349,280 - 0.6
349,617 + 16437 mRNA_8069 0.12 2.3
349,738 - 16437 mRNA_8069 0.16 -1.1
349,794 - 16437 mRNA_8069 0.18 -0.1
349,851 - 16437 mRNA_8069 0.20 0.3
349,880 - 16437 mRNA_8069 0.21 -0.3