Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8030

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8029: 16397 - K02152 ATPeV1G, ATP6G V-type H+-transporting ATPase subunit G, at 248921 to 249552 16397 mRNA_8030: 16398 - KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains, at 250044 to 251923 16398 mRNA_8031: 16399 - K14325 RNPS1 RNA-binding protein with serine-rich domain 1, at 252207 to 252830 16399

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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249,787 - -1.8
249,951 - -0.1
250,200 + -0.6
250,364 + 16398 mRNA_8030 0.17 0.4
250,699 + 16398 mRNA_8030 0.35 1.6
251,219 - 16398 mRNA_8030 0.62 -1.0
251,252 - 16398 mRNA_8030 0.64 0.4
251,413 + 16398 mRNA_8030 0.73 -0.7
251,628 - 16398 mRNA_8030 0.84 1.5
251,672 - 16398 mRNA_8030 0.87 1.2
251,822 - 1.8
251,830 - 0.2
251,857 - 0.1
251,941 - 2.2
251,955 - -0.7
251,956 - 0.8
251,964 - 0.2
251,966 + 0.1
251,968 + -0.7
251,980 + 0.1
252,280 + 16399 mRNA_8031 0.12 0.1
252,280 + 16399 mRNA_8031 0.12 0.7
252,414 + 16399 mRNA_8031 0.33 1.2
252,601 - 16399 mRNA_8031 0.63 0.4
252,854 + 0.5
252,864 + -0.8