Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8026

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235031 to 239261 16393 mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239573 to 243561 16394 mRNA_8027: 16395 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 243826 to 244717 16395

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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238,894 - 0.4
238,928 - -1.0
239,064 + 1.2
239,345 + -1.3
239,352 + 1.0
239,353 + -1.0
239,357 + -0.3
239,374 + -0.1
239,484 + 0.4
239,490 - -0.0
239,490 - 0.3
239,496 - 1.4
239,507 - -0.3
239,511 - 0.2
239,525 + 1.6
239,534 + -3.4
239,631 - 0.8
239,678 + -1.5
239,698 + -1.8
239,837 + 1.1
239,842 + -2.1
239,843 + -0.9
239,848 - -2.0
239,849 + 0.1
239,866 - 1.8
239,979 + 16394 mRNA_8026 0.10 1.1
240,060 + 16394 mRNA_8026 0.12 -0.9
240,092 + 16394 mRNA_8026 0.13 1.2
240,125 - 16394 mRNA_8026 0.14 2.3
240,263 - 16394 mRNA_8026 0.17 -0.8
240,268 + 16394 mRNA_8026 0.17 1.1
240,402 - 16394 mRNA_8026 0.21 1.3
240,540 - 16394 mRNA_8026 0.24 -0.8
240,860 - 16394 mRNA_8026 0.32 -0.1
241,592 + 16394 mRNA_8026 0.51 0.8
241,676 - 16394 mRNA_8026 0.53 2.0
241,723 - 16394 mRNA_8026 0.54 -0.7
241,761 - 16394 mRNA_8026 0.55 0.7
241,769 + 16394 mRNA_8026 0.55 0.7
241,863 + 16394 mRNA_8026 0.57 0.1
241,904 + 16394 mRNA_8026 0.58 2.6
241,958 - 16394 mRNA_8026 0.60 0.5
241,958 - 16394 mRNA_8026 0.60 0.2
242,232 + 16394 mRNA_8026 0.67 -2.6
242,276 - 16394 mRNA_8026 0.68 -1.3
242,360 - 16394 mRNA_8026 0.70 0.9
242,445 - 16394 mRNA_8026 0.72 1.3
242,591 - 16394 mRNA_8026 0.76 -0.1
242,713 - 16394 mRNA_8026 0.79 0.7
242,776 - 16394 mRNA_8026 0.80 0.4
242,795 + 16394 mRNA_8026 0.81 0.2
242,890 - 16394 mRNA_8026 0.83 -1.7
243,022 - 16394 mRNA_8026 0.86 -0.7
243,065 - 16394 mRNA_8026 0.88 -0.1
243,107 - 16394 mRNA_8026 0.89 -0.3
243,115 + 16394 mRNA_8026 0.89 0.8
243,180 + -0.2
243,214 + -1.5
243,245 - -1.4
243,255 + 0.0
243,320 + 1.0
243,341 + -1.5
243,356 - 0.3
243,503 - 0.4
243,505 + 0.3
243,515 - 0.5
243,553 + 0.1
243,659 + 1.5
243,827 - -0.2
243,974 - 16395 mRNA_8027 0.17 -0.5
243,976 + 16395 mRNA_8027 0.17 -1.7
243,978 - 16395 mRNA_8027 0.17 2.6
244,011 - 16395 mRNA_8027 0.21 0.0
244,081 - 16395 mRNA_8027 0.29 0.1
244,106 - 16395 mRNA_8027 0.31 -1.1
244,141 - 16395 mRNA_8027 0.35 0.1