Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8025

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8024: 16392 - K02988 RP-S5, MRPS5, rpsE small subunit ribosomal protein S5, at 233351 to 234544 16392 mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235031 to 239261 16393 mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239573 to 243561 16394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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234,578 - -0.1
234,578 - -0.7
234,579 - 0.8
234,600 - 0.3
234,600 - -0.1
234,600 - -0.7
234,600 - 0.8
234,605 + -0.5
234,610 - -1.7
234,616 - 0.3
234,617 + -0.5
234,621 - 1.1
234,625 - 1.4
234,736 - 0.1
234,739 - 0.1
234,741 + -1.6
234,772 - -0.5
234,880 - -0.6
234,913 + 0.3
235,036 - 1.1
235,053 - 0.3
235,072 + -0.3
235,174 + -1.4
235,467 - 16393 mRNA_8025 0.10 -1.0
235,484 + 16393 mRNA_8025 0.11 0.2
235,498 + 16393 mRNA_8025 0.11 -0.8
235,619 - 16393 mRNA_8025 0.14 -0.3
235,663 + 16393 mRNA_8025 0.15 -0.0
235,774 - 16393 mRNA_8025 0.18 0.3
236,604 + 16393 mRNA_8025 0.37 -1.0
236,641 - 16393 mRNA_8025 0.38 -1.4
237,049 - 16393 mRNA_8025 0.48 -0.3
238,058 + 16393 mRNA_8025 0.72 -1.8
238,314 - 16393 mRNA_8025 0.78 0.5
238,482 - 16393 mRNA_8025 0.82 0.7
238,894 - 0.4
238,928 - -1.0
239,064 + 1.2
239,345 + -1.3
239,352 + 1.0
239,353 + -1.0
239,357 + -0.3
239,374 + -0.1
239,484 + 0.4
239,490 - -0.0
239,490 - 0.3
239,496 - 1.4
239,507 - -0.3
239,511 - 0.2
239,525 + 1.6
239,534 + -3.4
239,631 - 0.8
239,678 + -1.5
239,698 + -1.8
239,837 + 1.1
239,842 + -2.1
239,843 + -0.9
239,848 - -2.0
239,849 + 0.1
239,866 - 1.8
239,979 + 16394 mRNA_8026 0.10 1.1
240,060 + 16394 mRNA_8026 0.12 -0.9
240,092 + 16394 mRNA_8026 0.13 1.2
240,125 - 16394 mRNA_8026 0.14 2.3