Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8013

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209272 to 211609 16380 mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212070 to 213325 16381 mRNA_8014: 16382 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 213638 to 214851 16382

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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211,199 + 16380 mRNA_8012 0.82 1.1
211,228 + 16380 mRNA_8012 0.84 2.9
211,761 - 0.3
211,775 - 2.1
211,777 - -0.0
211,780 + -1.1
211,783 - -0.6
211,785 - 2.3
211,788 + -1.6
211,790 - -1.2
211,840 - -0.7
211,965 - 1.4
211,978 - -0.3
211,981 + -2.3
211,982 + -0.7
211,997 - 1.3
212,002 - -0.0
212,122 - -1.8
212,128 - 2.5
212,154 + 0.3
212,181 + -0.2
212,198 - 16381 mRNA_8013 0.10 -0.3
212,294 - 16381 mRNA_8013 0.18 -1.2
212,444 + 16381 mRNA_8013 0.30 -1.0
212,577 + 16381 mRNA_8013 0.40 -0.5
212,750 - 16381 mRNA_8013 0.54 -0.9
213,429 - -1.0
213,537 - -0.7
213,573 - -1.6
213,580 - 1.0
213,585 + -3.0
213,636 - -1.3
213,643 - 1.7
213,649 - 2.8
213,651 + -0.2
213,651 + 1.5
213,757 - 1.9
213,766 + 16382 mRNA_8014 0.11 0.0
213,777 - 16382 mRNA_8014 0.11 -0.1
213,780 - 16382 mRNA_8014 0.12 -1.0
213,785 - 16382 mRNA_8014 0.12 0.4
213,786 + 16382 mRNA_8014 0.12 1.0
213,798 - 16382 mRNA_8014 0.13 -1.8
213,804 - 16382 mRNA_8014 0.14 1.6
213,934 + 16382 mRNA_8014 0.24 1.5
214,101 + 16382 mRNA_8014 0.38 -0.1
214,105 + 16382 mRNA_8014 0.38 -0.7