Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8012

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207819 to 208967 16379 mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209272 to 211609 16380 mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212070 to 213325 16381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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208,904 - -1.1
208,955 + -2.8
208,958 - 1.2
208,965 - 1.9
208,969 - -2.0
209,011 - -0.6
209,162 + -1.0
209,168 + 0.5
209,438 + 0.3
209,588 + 16380 mRNA_8012 0.14 0.2
209,596 + 16380 mRNA_8012 0.14 -1.5
209,856 + 16380 mRNA_8012 0.25 3.1
210,005 - 16380 mRNA_8012 0.31 -1.1
210,036 - 16380 mRNA_8012 0.33 -0.0
210,051 + 16380 mRNA_8012 0.33 -0.5
210,312 + 16380 mRNA_8012 0.44 -0.2
210,315 - 16380 mRNA_8012 0.45 -1.3
210,563 - 16380 mRNA_8012 0.55 -0.7
210,914 - 16380 mRNA_8012 0.70 0.6
210,922 - 16380 mRNA_8012 0.71 -0.8
210,922 - 16380 mRNA_8012 0.71 -0.4
211,043 - 16380 mRNA_8012 0.76 -1.7
211,199 + 16380 mRNA_8012 0.82 1.1
211,228 + 16380 mRNA_8012 0.84 2.9
211,761 - 0.3
211,775 - 2.1
211,777 - -0.0
211,780 + -1.1
211,783 - -0.6
211,785 - 2.3
211,788 + -1.6
211,790 - -1.2
211,840 - -0.7
211,965 - 1.4
211,978 - -0.3
211,981 + -2.3
211,982 + -0.7
211,997 - 1.3
212,002 - -0.0
212,122 - -1.8
212,128 - 2.5
212,154 + 0.3
212,181 + -0.2
212,198 - 16381 mRNA_8013 0.10 -0.3
212,294 - 16381 mRNA_8013 0.18 -1.2
212,444 + 16381 mRNA_8013 0.30 -1.0
212,577 + 16381 mRNA_8013 0.40 -0.5