Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8003

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8003: 16371 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 190114 to 191045 16371 mRNA_8004: 16372 - K06648 SWI6 regulatory protein SWI6, at 191300 to 193753 16372

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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189,362 + -1.0
189,399 - 1.6
189,417 - 1.1
189,531 + -0.2
189,674 - 0.4
189,694 + -0.4
189,831 + -0.3
189,878 - 0.9
189,886 + -0.7
189,903 + -0.5
189,904 - 1.8
189,946 + 0.4
189,984 - -0.5
189,988 - -0.5
190,005 - -0.1
190,029 - 1.1
190,033 - 0.2
190,038 - -0.1
190,111 - -0.1
190,141 + 0.4
190,149 - 0.0
190,167 + -0.5
190,177 - -0.1
190,193 + 0.4
190,216 - 16371 mRNA_8003 0.11 1.2
190,266 - 16371 mRNA_8003 0.16 -2.5
190,390 + 16371 mRNA_8003 0.30 -0.7
190,456 - 16371 mRNA_8003 0.37 -0.0
190,480 + 16371 mRNA_8003 0.39 -1.2
190,506 + 16371 mRNA_8003 0.42 0.1
190,816 + 16371 mRNA_8003 0.75 -0.5
191,091 - 0.9
191,091 + 1.1
191,341 - -0.7
191,839 + 16372 mRNA_8004 0.22 0.8