Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7987

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7986: 16354 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 151105 to 154451 16354 mRNA_7987: 16355 - SUPERFAMILY--SSF144232, at 155023 to 156185 16355 mRNA_7988: 16356 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 156478 to 157308 16356

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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154,054 + 16354 mRNA_7986 0.88 1.4
154,115 + 16354 mRNA_7986 0.90 -0.3
154,181 - -0.2
154,234 - 1.0
154,330 + 0.1
154,445 - -2.6
154,480 - 0.1
154,493 + 0.7
154,493 + -0.1
154,504 - -1.2
154,690 - -0.5
154,796 - -0.3
154,921 - 0.3
154,933 + 0.2
155,081 - -1.6
155,406 + 16355 mRNA_7987 0.33 0.5
155,478 - 16355 mRNA_7987 0.39 -0.8
155,499 - 16355 mRNA_7987 0.41 -1.0
155,526 - 16355 mRNA_7987 0.43 0.5
155,535 + 16355 mRNA_7987 0.44 -1.7
155,540 + 16355 mRNA_7987 0.44 -0.4
155,641 + 16355 mRNA_7987 0.53 0.7
155,812 + 16355 mRNA_7987 0.68 1.2
155,825 + 16355 mRNA_7987 0.69 0.4
155,833 + 16355 mRNA_7987 0.70 0.9
155,838 - 16355 mRNA_7987 0.70 -0.2
155,974 + 16355 mRNA_7987 0.82 1.1
155,996 - 16355 mRNA_7987 0.84 -0.1
156,106 - 2.4
156,110 + -0.2
156,116 - -0.0
156,162 + -0.3
156,186 + -0.5
156,255 + 0.4
156,259 + 0.2
156,278 + 0.8
156,280 + -0.4
156,281 - 0.3
156,282 + -0.5
156,293 + 0.5
156,294 + -1.2
156,312 + 1.1
156,420 - 1.0
156,683 - 16356 mRNA_7988 0.25 0.4
156,712 + 16356 mRNA_7988 0.28 -1.0
156,723 - 16356 mRNA_7988 0.29 -0.1
156,803 + 16356 mRNA_7988 0.39 -0.2
156,850 - 16356 mRNA_7988 0.45 -0.8
157,027 + 16356 mRNA_7988 0.66 0.8
157,027 + 16356 mRNA_7988 0.66 -0.1