Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7986

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7985: 16353 - K15440 TAD1, ADAT1 tRNA-specific adenosine deaminase 1, at 149093 to 150954 16353 mRNA_7986: 16354 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 151105 to 154451 16354 mRNA_7987: 16355 - SUPERFAMILY--SSF144232, at 155023 to 156185 16355

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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150,121 - 16353 mRNA_7985 0.55 0.4
150,169 - 16353 mRNA_7985 0.58 0.4
150,555 - 16353 mRNA_7985 0.79 -1.2
150,972 + 0.7
151,412 - -1.0
151,417 + -1.3
151,461 + 16354 mRNA_7986 0.11 0.0
151,551 - 16354 mRNA_7986 0.13 -1.0
151,713 + 16354 mRNA_7986 0.18 -0.7
151,749 - 16354 mRNA_7986 0.19 0.2
151,859 - 16354 mRNA_7986 0.23 -1.0
152,093 - 16354 mRNA_7986 0.30 -0.3
152,188 - 16354 mRNA_7986 0.32 -0.7
152,189 + 16354 mRNA_7986 0.32 0.7
152,447 - 16354 mRNA_7986 0.40 0.4
152,542 + 16354 mRNA_7986 0.43 0.6
152,611 + 16354 mRNA_7986 0.45 -0.6
152,768 - 16354 mRNA_7986 0.50 -2.6
152,791 + 16354 mRNA_7986 0.50 0.1
152,884 + 16354 mRNA_7986 0.53 0.0
152,895 - 16354 mRNA_7986 0.53 0.3
152,898 - 16354 mRNA_7986 0.54 1.7
152,906 + 16354 mRNA_7986 0.54 -2.6
153,090 + 16354 mRNA_7986 0.59 -0.9
153,172 + 16354 mRNA_7986 0.62 -2.0
153,221 + 16354 mRNA_7986 0.63 -1.4
153,471 + 16354 mRNA_7986 0.71 0.1
154,054 + 16354 mRNA_7986 0.88 1.4
154,115 + 16354 mRNA_7986 0.90 -0.3
154,181 - -0.2
154,234 - 1.0
154,330 + 0.1
154,445 - -2.6
154,480 - 0.1
154,493 + 0.7
154,493 + -0.1
154,504 - -1.2
154,690 - -0.5
154,796 - -0.3
154,921 - 0.3
154,933 + 0.2
155,081 - -1.6
155,406 + 16355 mRNA_7987 0.33 0.5