Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7980

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7979: 16347 - KOG0504 FOG Ankyrin repeat, at 137884 to 138763 16347 mRNA_7980: 16348 - KOG0550 Molecular chaperone (DnaJ superfamily), at 138998 to 141142 16348 mRNA_7981: 16349 - KOG2504 Monocarboxylate transporter, at 141526 to 143466 16349

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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138,045 + 16347 mRNA_7979 0.18 -0.1
138,870 + -0.9
138,979 - 2.2
139,086 - 0.2
139,127 - 0.2
139,266 - 16348 mRNA_7980 0.12 0.5
139,905 - 16348 mRNA_7980 0.42 -0.9
139,964 - 16348 mRNA_7980 0.45 0.2
140,239 - 16348 mRNA_7980 0.58 2.0
140,241 + 16348 mRNA_7980 0.58 -0.6
140,257 - 16348 mRNA_7980 0.59 -0.5
140,286 - 16348 mRNA_7980 0.60 1.7
140,292 + 16348 mRNA_7980 0.60 1.0
140,371 - 16348 mRNA_7980 0.64 0.6
140,592 - 16348 mRNA_7980 0.74 0.4
141,086 + -1.3
141,097 + 0.7
141,338 + 0.7
141,415 + 0.6
141,462 + -1.4
141,470 + -1.0
141,616 + -0.9
141,792 - 16349 mRNA_7981 0.14 -1.6
141,919 - 16349 mRNA_7981 0.20 2.3