Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7972

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7971: 16339 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 116954 to 120210 16339 mRNA_7972: 16340 - Hypothetical Protein, at 120428 to 122131 16340 mRNA_7973: 16341 - KOG3511 Sortilin and related receptors, at 122692 to 128410 16341

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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119,439 - 16339 mRNA_7971 0.76 1.9
119,513 + 16339 mRNA_7971 0.79 -0.6
119,560 + 16339 mRNA_7971 0.80 -0.8
120,006 + 1.8
120,013 - 0.1
120,198 + 1.3
120,235 - 1.3
120,397 + 0.7
120,420 - -0.5
120,436 + -0.3
120,450 - 0.2
120,564 + 0.4
120,629 + 16340 mRNA_7972 0.12 -0.5
120,648 + 16340 mRNA_7972 0.13 -2.3
120,697 + 16340 mRNA_7972 0.16 0.2
120,975 - 16340 mRNA_7972 0.32 -0.5
120,977 - 16340 mRNA_7972 0.32 1.4
121,000 - 16340 mRNA_7972 0.34 0.1
121,081 + 16340 mRNA_7972 0.38 -1.1
121,081 + 16340 mRNA_7972 0.38 1.6
121,183 + 16340 mRNA_7972 0.44 -0.1
121,327 + 16340 mRNA_7972 0.53 -0.5
121,431 + 16340 mRNA_7972 0.59 0.6
121,461 - 16340 mRNA_7972 0.61 0.6
121,486 - 16340 mRNA_7972 0.62 -1.1
121,626 + 16340 mRNA_7972 0.70 -1.2
121,638 + 16340 mRNA_7972 0.71 0.2
121,665 + 16340 mRNA_7972 0.73 1.7
121,948 - 16340 mRNA_7972 0.89 0.6
121,949 - 16340 mRNA_7972 0.89 0.5
122,110 - -2.0
122,152 + -0.7
122,172 - -0.9
122,408 + 2.4
122,503 - -0.7
122,524 - -0.8
122,702 + -0.8
122,714 - 1.0
123,107 - 1.1