Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7963

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7962: 16330 - K08967 mtnD, mtnZ, ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, at 105517 to 106511 16330 mRNA_7963: 16331 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 106769 to 107651 16331 mRNA_7964: 16332 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 108075 to 108950 16332

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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105,788 - 16330 mRNA_7962 0.27 0.1
105,793 + 16330 mRNA_7962 0.28 0.7
105,964 + 16330 mRNA_7962 0.45 -0.5
105,967 - 16330 mRNA_7962 0.45 0.0
105,980 + 16330 mRNA_7962 0.47 0.3
106,118 + 16330 mRNA_7962 0.60 -1.4
106,124 - 16330 mRNA_7962 0.61 0.0
106,160 + 16330 mRNA_7962 0.65 -2.5
106,166 - 16330 mRNA_7962 0.65 0.2
106,279 + 16330 mRNA_7962 0.77 -0.4
106,282 - 16330 mRNA_7962 0.77 0.5
106,564 + 0.1
106,567 - 0.6
106,574 + -0.8
106,576 - -1.1
106,610 + -0.3
106,660 + 0.5
106,767 + 1.5
106,769 - -0.9
106,862 - 16331 mRNA_7963 0.11 0.7
107,061 + 16331 mRNA_7963 0.33 -1.0
107,263 + 16331 mRNA_7963 0.56 1.0
107,420 + 16331 mRNA_7963 0.74 0.7
107,430 + 16331 mRNA_7963 0.75 -1.2
107,451 - 16331 mRNA_7963 0.77 -0.6
107,467 + 16331 mRNA_7963 0.79 0.5
107,604 + -0.8
107,618 - 0.8
107,635 + -0.3
107,886 + -0.3
107,910 - 1.5
107,916 + -0.0
108,012 - -0.3
108,015 - 0.3
108,019 - -1.9
108,178 + 16332 mRNA_7964 0.12 -0.3
108,345 - 16332 mRNA_7964 0.31 0.1
108,370 + 16332 mRNA_7964 0.34 -0.0
108,552 + 16332 mRNA_7964 0.54 -0.2
108,585 - 16332 mRNA_7964 0.58 -1.7
108,623 + 16332 mRNA_7964 0.63 1.9