Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7937

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7936: 16304 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 52307 to 53072 16304 mRNA_7937: 16305 - KOG0550 Molecular chaperone (DnaJ superfamily), at 53529 to 55424 16305 mRNA_7938: 16306 - Hypothetical Protein, at 55876 to 58183 16306

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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52,686 - 16304 mRNA_7936 0.49 0.4
52,797 - 16304 mRNA_7936 0.64 0.2
52,826 + 16304 mRNA_7936 0.68 -1.3
52,975 + 16304 mRNA_7936 0.87 -1.8
53,084 - 0.5
53,089 + -0.4
53,095 + 0.5
53,121 - 0.3
53,127 + 2.5
53,134 - -2.1
53,135 + -1.4
53,138 - 0.0
53,176 + -1.7
53,177 - 0.3
53,189 - -0.1
53,199 + -0.6
53,202 + -0.5
53,219 + 0.3
53,460 - 1.2
53,847 + 16305 mRNA_7937 0.17 0.7
54,045 + 16305 mRNA_7937 0.27 -0.6
54,142 - 16305 mRNA_7937 0.32 -0.2
54,142 - 16305 mRNA_7937 0.32 -1.3
54,199 + 16305 mRNA_7937 0.35 -0.3
54,202 - 16305 mRNA_7937 0.35 0.9
54,463 + 16305 mRNA_7937 0.49 1.4
54,629 + 16305 mRNA_7937 0.58 -2.1
55,106 + 16305 mRNA_7937 0.83 0.1
55,211 - 16305 mRNA_7937 0.89 -2.2
55,524 - 0.5
55,594 - -1.9
55,602 - 1.0
55,616 + -0.1
55,740 + -0.3
55,744 - 1.1
55,792 - -1.2
56,076 + 0.0
56,081 - 0.6
56,229 - 16306 mRNA_7938 0.15 -2.4