Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7922

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7921: 16289 - KOG3022 Predicted ATPase, nucleotide-binding, at 25144 to 26524 16289 mRNA_7922: 16290 - K17065 DNM1L dynamin 1-like protein, at 27039 to 30180 16290 mRNA_7923: 16291 - Hypothetical Protein, at 30690 to 33001 16291

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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26,278 + 16289 mRNA_7921 0.82 0.7
26,518 - -1.7
26,523 + 0.5
26,527 + -0.4
26,531 - 0.4
26,558 - -0.5
26,650 - 0.7
26,674 - -0.0
26,676 - 3.3
26,681 - 0.7
26,683 + 0.3
26,696 + 3.0
26,697 - -0.7
26,702 + -0.6
26,713 + -1.2
26,840 - -1.5
26,842 - 1.2
26,844 - 1.2
26,847 + -1.3
26,849 - 0.4
26,851 + 0.6
26,852 - -0.5
26,856 + 1.4
26,873 - -0.4
26,896 + 0.2
26,902 + -1.0
27,132 - 2.6
28,022 - 16290 mRNA_7922 0.31 -1.6
28,527 + 16290 mRNA_7922 0.47 1.2
28,556 + 16290 mRNA_7922 0.48 -0.1
28,865 + 16290 mRNA_7922 0.58 0.4
28,911 + 16290 mRNA_7922 0.60 0.2
29,218 - 16290 mRNA_7922 0.69 0.9
29,574 + 16290 mRNA_7922 0.81 -1.3
29,672 - 16290 mRNA_7922 0.84 -0.0
29,952 - -1.4
30,041 + -0.8
30,157 - 0.2
30,188 - 0.6
30,218 + -0.4
30,640 + -1.2
30,643 - 0.5
30,662 - 0.6
30,680 + 0.4
30,800 + -1.3
30,812 - 0.1
30,813 + 0.8
30,954 + 16291 mRNA_7923 0.11 -0.3
30,962 + 16291 mRNA_7923 0.12 1.6
31,047 - 16291 mRNA_7923 0.15 -0.9
31,062 - 16291 mRNA_7923 0.16 0.9
31,064 - 16291 mRNA_7923 0.16 0.4
31,065 + 16291 mRNA_7923 0.16 -1.0
31,068 + 16291 mRNA_7923 0.16 1.1
31,068 - 16291 mRNA_7923 0.16 0.5
31,072 + 16291 mRNA_7923 0.17 2.4
31,084 + 16291 mRNA_7923 0.17 -1.1
31,143 - 16291 mRNA_7923 0.20 0.3
31,150 + 16291 mRNA_7923 0.20 -0.6