Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7909

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7908: 16276 - K03783 punA, PNP purine-nucleoside phosphorylase, at 1357021 to 1359036 16276 mRNA_7909: 16277 - Hypothetical Protein, at 1359172 to 1360020 16277 mRNA_7910: 16278 - KOG3767 Sideroflexin, at 1360138 to 1362160 16278

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,358,431 - 16276 mRNA_7908 0.70 1.1
1,358,557 + 16276 mRNA_7908 0.76 -1.2
1,358,560 - 16276 mRNA_7908 0.76 -1.0
1,358,560 - 16276 mRNA_7908 0.76 0.5
1,358,674 - 16276 mRNA_7908 0.82 -0.0
1,358,885 - -1.5
1,358,966 - -0.3
1,358,974 + -0.7
1,359,003 - 1.1
1,359,004 - 0.8
1,359,021 + 0.9
1,359,117 - -2.0
1,359,181 + -1.0
1,359,329 + 16277 mRNA_7909 0.18 -0.0
1,359,439 - 16277 mRNA_7909 0.31 -0.0
1,359,474 - 16277 mRNA_7909 0.36 0.7
1,359,488 - 16277 mRNA_7909 0.37 0.9
1,359,599 - 16277 mRNA_7909 0.50 -1.4
1,359,664 - 16277 mRNA_7909 0.58 -0.2
1,359,733 - 16277 mRNA_7909 0.66 -1.2
1,359,838 - 16277 mRNA_7909 0.78 -0.7
1,359,845 - 16277 mRNA_7909 0.79 -0.1
1,359,846 - 16277 mRNA_7909 0.79 -0.3
1,359,879 - 16277 mRNA_7909 0.83 -1.2
1,359,879 - 16277 mRNA_7909 0.83 -0.7
1,359,913 - 16277 mRNA_7909 0.87 0.1
1,360,033 + 1.8
1,360,040 - -0.1
1,360,042 - -0.3
1,360,047 - 0.3
1,360,065 + -0.6
1,360,092 + 1.3
1,360,144 + -1.9
1,360,147 - 0.5
1,360,148 + -0.8
1,360,148 + 0.9
1,360,231 - -1.3
1,360,339 - -1.0
1,360,347 + 16278 mRNA_7910 0.10 -2.5
1,360,375 - 16278 mRNA_7910 0.12 -1.2
1,360,538 + 16278 mRNA_7910 0.20 -1.9
1,360,659 - 16278 mRNA_7910 0.26 -1.0
1,360,705 - 16278 mRNA_7910 0.28 -1.5
1,360,774 - 16278 mRNA_7910 0.31 -0.1
1,360,798 + 16278 mRNA_7910 0.33 0.1
1,360,888 - 16278 mRNA_7910 0.37 -0.6
1,360,977 - 16278 mRNA_7910 0.41 1.3