Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7890

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7889: 16257 - Hypothetical Protein, at 1307542 to 1308171 16257 mRNA_7890: 16258 - K19564 CTR, HNM1 choline transport protein, at 1308906 to 1311166 16258 mRNA_7891: 16259 - Hypothetical Protein, at 1311426 to 1311848 16259

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,308,078 - 16257 mRNA_7889 0.85 0.8
1,308,086 + 16257 mRNA_7889 0.86 0.2
1,308,222 - -0.2
1,308,365 - -2.0
1,308,365 - -0.5
1,308,412 + 0.8
1,308,500 + -1.2
1,308,652 - 0.0
1,308,655 - 0.4
1,308,661 - 0.2
1,308,673 + 0.6
1,308,675 + 0.6
1,308,678 + -0.6
1,308,691 + -0.9
1,308,696 - 0.5
1,308,717 - -0.5
1,308,732 + -0.1
1,308,745 + 0.1
1,308,767 - 1.0
1,308,784 - -0.5
1,308,787 - -0.5
1,308,788 + 0.5
1,308,788 - 0.6
1,308,800 + -2.1
1,308,800 + 0.2
1,308,809 + -1.4
1,308,811 + -0.2
1,308,815 + -0.6
1,308,818 + 0.3
1,308,848 + -1.5
1,308,926 - 0.6
1,308,972 + 1.4
1,308,974 - -2.2
1,308,974 + 1.1
1,308,977 + -0.6
1,309,072 + -1.8
1,309,111 - 2.2
1,309,123 - -0.3
1,309,129 - 2.3
1,309,169 + 16258 mRNA_7890 0.12 0.7
1,309,223 + 16258 mRNA_7890 0.14 -0.2
1,309,226 - 16258 mRNA_7890 0.14 -0.5
1,309,238 - 16258 mRNA_7890 0.15 -0.4
1,309,530 - 16258 mRNA_7890 0.28 -0.3
1,309,539 - 16258 mRNA_7890 0.28 -0.8
1,309,560 - 16258 mRNA_7890 0.29 1.5
1,309,569 + 16258 mRNA_7890 0.29 0.2
1,309,599 + 16258 mRNA_7890 0.31 0.0
1,309,600 + 16258 mRNA_7890 0.31 0.4
1,309,846 + 16258 mRNA_7890 0.42 -0.0
1,309,964 - 16258 mRNA_7890 0.47 0.2
1,309,978 - 16258 mRNA_7890 0.47 -1.0
1,310,132 - 16258 mRNA_7890 0.54 -0.5
1,310,184 - 16258 mRNA_7890 0.57 1.3
1,310,248 + 16258 mRNA_7890 0.59 -0.1
1,310,434 - 16258 mRNA_7890 0.68 1.1
1,310,563 + 16258 mRNA_7890 0.73 2.0
1,310,593 + 16258 mRNA_7890 0.75 0.5
1,310,977 + -3.4
1,311,035 + 0.2
1,311,287 - 1.6
1,311,321 - -0.4
1,311,329 - 0.8
1,311,338 + 0.6
1,311,342 + 0.6
1,311,343 - -0.5
1,311,469 - 16259 mRNA_7891 0.10 0.2
1,311,650 - 16259 mRNA_7891 0.53 -0.7
1,311,777 - 16259 mRNA_7891 0.83 0.1