Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7855

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7854: 16222 - HMMPfam-Fungal protein of unknown function (DUF2015)-PF09435, at 1227887 to 1228457 16222 mRNA_7855: 16223 - K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82, at 1228855 to 1230795 16223 mRNA_7856: 16224 - K17783 ERV1, GFER, ALR mitochondrial FAD-linked sulfhydryl oxidase, at 1230890 to 1231576 16224

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,227,963 - 16222 mRNA_7854 0.13 -2.1
1,228,072 + 16222 mRNA_7854 0.32 -0.2
1,228,171 + 16222 mRNA_7854 0.50 -0.7
1,228,354 + 16222 mRNA_7854 0.82 -0.8
1,228,375 + 16222 mRNA_7854 0.85 -0.3
1,228,634 - 1.4
1,228,775 - -2.2
1,228,824 + -0.3
1,228,961 - 0.9
1,229,119 + 16223 mRNA_7855 0.14 -1.3
1,229,256 + 16223 mRNA_7855 0.21 -0.9
1,229,397 - 16223 mRNA_7855 0.28 -1.9
1,230,435 - 16223 mRNA_7855 0.81 1.3
1,230,716 - -0.0
1,230,753 + -0.5
1,230,889 + -0.0
1,231,583 + -0.0
1,231,591 - 0.2
1,231,621 - -0.4
1,231,635 + -0.3
1,231,640 - -0.0
1,231,647 + 0.6
1,231,650 + -1.4
1,231,790 - -0.1