Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7828

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7827: 16195 - KOG4680 Uncharacterized conserved protein, contains ML domain, at 1158010 to 1158995 16195 mRNA_7828: 16196 - K01940 argG, ASS1 argininosuccinate synthase, at 1159228 to 1161010 16196 mRNA_7829: 16197 - K06126 COQ6 ubiquinone biosynthesis monooxygenase Coq6, at 1161374 to 1163565 16197

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,158,433 - 16195 mRNA_7827 0.43 0.5
1,158,460 + 16195 mRNA_7827 0.46 1.8
1,158,600 + 16195 mRNA_7827 0.60 -0.8
1,158,605 + 16195 mRNA_7827 0.60 -0.1
1,158,861 - 16195 mRNA_7827 0.86 -0.5
1,158,884 + 16195 mRNA_7827 0.89 0.0
1,158,891 + 16195 mRNA_7827 0.89 0.6
1,159,024 - -0.7
1,159,051 + -0.3
1,159,057 + 1.4
1,159,218 + 0.6
1,159,271 - 0.0
1,159,459 - 16196 mRNA_7828 0.13 -1.2
1,159,516 - 16196 mRNA_7828 0.16 -2.6
1,160,044 - 16196 mRNA_7828 0.46 -2.1
1,160,169 - 16196 mRNA_7828 0.53 -4.0
1,160,176 + 16196 mRNA_7828 0.53 -1.3
1,160,492 + 16196 mRNA_7828 0.71 -2.4
1,160,632 + 16196 mRNA_7828 0.79 -4.6
1,160,765 + 16196 mRNA_7828 0.86 -3.1
1,160,908 - -5.5
1,160,927 + -4.1
1,160,930 + -1.2
1,161,056 - -0.4
1,161,203 - -0.4
1,161,220 - -1.0
1,161,221 - 0.2
1,161,229 - 0.4
1,161,245 - -1.7
1,161,361 - -0.1
1,161,366 - -0.2
1,161,370 + -1.8