Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7824

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7823: 16191 - K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3, at 1150114 to 1151854 16191 mRNA_7824: 16192 - K17981 MTFP1, MTP18 mitochondrial fission process protein 1, at 1152339 to 1153268 16192 mRNA_7825: 16193 - K00759 APRT, apt adenine phosphoribosyltransferase, at 1153417 to 1154602 16193

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,151,748 - 0.2
1,152,058 + 0.4
1,152,107 - -0.2
1,152,154 - -0.6
1,152,157 - 2.0
1,152,174 + -0.2
1,152,174 - -0.4
1,152,341 + 0.4
1,152,504 + 16192 mRNA_7824 0.18 1.9
1,152,615 - 16192 mRNA_7824 0.30 0.5
1,152,744 - 16192 mRNA_7824 0.44 1.1
1,152,780 - 16192 mRNA_7824 0.47 -0.1
1,153,054 - 16192 mRNA_7824 0.77 0.2
1,153,183 + -0.7
1,153,184 - -1.4
1,153,222 - -0.4
1,153,228 - 1.6
1,153,255 + -1.2
1,153,300 + -2.9
1,153,323 + -0.0
1,153,338 - -1.4
1,153,340 + 0.3
1,153,342 - 0.3
1,153,343 + 0.5
1,153,343 + 2.6
1,153,344 + -0.1
1,153,344 - 1.7
1,153,348 - -0.4
1,153,350 + 0.2
1,153,351 - -0.1
1,153,355 + -0.0
1,153,357 + 0.3
1,153,367 + -0.5
1,153,376 + -0.2
1,153,376 + 0.4
1,153,469 - -0.9
1,153,528 - -1.0
1,153,632 - 16193 mRNA_7825 0.18 -1.8
1,153,638 + 16193 mRNA_7825 0.19 -0.9
1,153,668 + 16193 mRNA_7825 0.21 2.8
1,153,670 + 16193 mRNA_7825 0.21 0.0
1,153,811 - 16193 mRNA_7825 0.33 -1.8
1,153,953 - 16193 mRNA_7825 0.45 -0.2
1,154,085 - 16193 mRNA_7825 0.56 0.2
1,154,100 + 16193 mRNA_7825 0.58 -0.6