Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7818

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7817: 16185 - KOG0254 Predicted transporter (major facilitator superfamily), at 1135639 to 1138436 16185 mRNA_7818: 16186 - K10865 MRE11 double-strand break repair protein MRE11, at 1138694 to 1141964 16186 mRNA_7819: 16187 - K15015 SLC32A, VGAT solute carrier family 32 (vesicular inhibitory amino acid transporter), at 1142212 to 1144699 16187

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,137,700 - 16185 mRNA_7817 0.74 0.4
1,137,908 - 16185 mRNA_7817 0.81 2.2
1,138,070 - 16185 mRNA_7817 0.87 -2.4
1,138,477 - 0.5
1,138,503 + -0.4
1,138,516 - -1.4
1,138,844 - -0.9
1,138,959 - -0.8
1,139,214 - 16186 mRNA_7818 0.16 1.8
1,139,402 - 16186 mRNA_7818 0.22 2.9
1,141,732 + 1.0
1,141,973 - -0.6
1,141,976 - 1.8
1,141,977 + 0.0
1,141,988 - 0.6
1,142,070 - 1.6
1,142,079 + 1.0
1,142,212 - 0.4
1,142,397 + 0.1
1,142,507 + 16187 mRNA_7819 0.12 3.4
1,142,529 + 16187 mRNA_7819 0.13 -1.8
1,142,943 + 16187 mRNA_7819 0.29 -0.2
1,142,954 + 16187 mRNA_7819 0.30 -1.6
1,142,956 - 16187 mRNA_7819 0.30 0.7
1,142,956 - 16187 mRNA_7819 0.30 -0.5
1,142,960 - 16187 mRNA_7819 0.30 -0.2