Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7702

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7701: 16069 - SMART-Armadillo/beta-catenin-like repeats-SM00185,SUPERFAMILY--SSF48371, at 877198 to 880311 16069 mRNA_7702: 16070 - BLAST endoglucanase [Aspergillus fumigatus Af293], at 880758 to 882745 16070 mRNA_7703: 16071 - KOG2996 Rho guanine nucleotide exchange factor VAV3, at 883081 to 887724 16071

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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879,785 + 16069 mRNA_7701 0.83 0.7
879,915 - 16069 mRNA_7701 0.87 -0.7
879,915 - 16069 mRNA_7701 0.87 -0.9
879,927 + 16069 mRNA_7701 0.88 -0.1
879,935 + 16069 mRNA_7701 0.88 0.2
880,200 + 0.6
880,204 + 1.3
880,206 + -0.1
880,217 - 0.2
880,367 - -1.3
880,376 + 0.3
880,463 - 0.5
880,502 + 0.0
880,507 - 0.1
880,515 - -0.3
880,641 - -1.1
880,678 + -0.7
880,822 + -1.0
880,857 + -0.8
880,948 - -1.2
881,101 - 16070 mRNA_7702 0.17 -0.7
881,119 - 16070 mRNA_7702 0.18 -0.2
881,120 + 16070 mRNA_7702 0.18 2.2
881,223 - 16070 mRNA_7702 0.23 -0.6
881,253 - 16070 mRNA_7702 0.25 2.3
881,411 - 16070 mRNA_7702 0.33 0.6
881,420 - 16070 mRNA_7702 0.33 -0.2
881,565 - 16070 mRNA_7702 0.41 -0.2
881,740 - 16070 mRNA_7702 0.49 1.0
882,144 + 16070 mRNA_7702 0.70 -0.7
882,226 + 16070 mRNA_7702 0.74 1.5
882,439 + 16070 mRNA_7702 0.85 -0.0
882,700 + -0.1
882,894 + -2.9
882,992 - 1.5
882,997 - -1.4
883,017 - 0.5