Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7701

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7700: 16068 - HMMPfam-14-3-3 protein-PF00244,PRINTS-14-3-3 protein zeta signature-PR00305,ProSitePatterns-14-3-3 proteins signature 1.-PS00796,SMART-14-3-3 homologues-SM00101,SUPERFAMILY--SSF48445, at 874959 to 876595 16068 mRNA_7701: 16069 - SMART-Armadillo/beta-catenin-like repeats-SM00185,SUPERFAMILY--SSF48371, at 877198 to 880311 16069 mRNA_7702: 16070 - BLAST endoglucanase [Aspergillus fumigatus Af293], at 880758 to 882745 16070

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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876,225 + 16068 mRNA_7700 0.77 1.9
876,339 + 16068 mRNA_7700 0.84 0.5
876,481 - 0.1
876,495 + 0.3
876,517 + 0.6
876,524 - 0.1
876,564 - 0.4
876,641 - 2.5
876,661 + 0.6
876,669 + 0.6
876,761 - 0.5
876,809 - 0.7
876,823 + 1.2
876,824 + 0.4
876,839 + -1.4
876,839 + -2.1
876,940 + -0.8
876,942 - -1.4
876,946 - -2.7
876,946 - -0.3
876,948 - -0.1
876,950 - 1.3
876,950 - -0.4
876,951 + 0.2
876,960 - -1.3
876,961 - 0.2
876,994 - 0.3
877,009 + 0.4
877,020 + -0.1
877,035 + 0.5
877,099 + 0.0
877,113 - -1.3
877,121 + 0.3
877,137 + 1.1
877,145 - 0.2
877,151 - 0.1
877,152 + 0.3
877,173 + 0.0
877,249 - -0.2
877,259 + -0.0
877,319 + 1.3
877,379 - 0.2
877,401 + -0.5
877,409 + 0.6
877,415 - -1.1
877,546 + 16069 mRNA_7701 0.11 1.4
877,709 + 16069 mRNA_7701 0.16 -0.7
877,714 + 16069 mRNA_7701 0.17 0.3
878,126 - 16069 mRNA_7701 0.30 0.3
878,258 + 16069 mRNA_7701 0.34 -1.7
878,593 - 16069 mRNA_7701 0.45 2.3
878,600 + 16069 mRNA_7701 0.45 -0.1
878,758 + 16069 mRNA_7701 0.50 1.0
879,033 + 16069 mRNA_7701 0.59 2.7
879,180 + 16069 mRNA_7701 0.64 -0.5
879,368 - 16069 mRNA_7701 0.70 -0.6
879,602 + 16069 mRNA_7701 0.77 0.5
879,785 + 16069 mRNA_7701 0.83 0.7
879,915 - 16069 mRNA_7701 0.87 -0.7
879,915 - 16069 mRNA_7701 0.87 -0.9
879,927 + 16069 mRNA_7701 0.88 -0.1
879,935 + 16069 mRNA_7701 0.88 0.2
880,200 + 0.6
880,204 + 1.3
880,206 + -0.1
880,217 - 0.2
880,367 - -1.3
880,376 + 0.3
880,463 - 0.5
880,502 + 0.0
880,507 - 0.1
880,515 - -0.3
880,641 - -1.1
880,678 + -0.7
880,822 + -1.0
880,857 + -0.8
880,948 - -1.2
881,101 - 16070 mRNA_7702 0.17 -0.7
881,119 - 16070 mRNA_7702 0.18 -0.2
881,120 + 16070 mRNA_7702 0.18 2.2
881,223 - 16070 mRNA_7702 0.23 -0.6
881,253 - 16070 mRNA_7702 0.25 2.3