Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7700

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7700: 16068 - HMMPfam-14-3-3 protein-PF00244,PRINTS-14-3-3 protein zeta signature-PR00305,ProSitePatterns-14-3-3 proteins signature 1.-PS00796,SMART-14-3-3 homologues-SM00101,SUPERFAMILY--SSF48445, at 874959 to 876595 16068 mRNA_7701: 16069 - SMART-Armadillo/beta-catenin-like repeats-SM00185,SUPERFAMILY--SSF48371, at 877198 to 880311 16069

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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874,543 - 0.1
874,588 - 0.5
874,656 + 1.8
875,064 - 0.0
875,067 - -1.9
875,349 - 16068 mRNA_7700 0.24 -1.2
875,447 - 16068 mRNA_7700 0.30 0.2
875,471 + 16068 mRNA_7700 0.31 -1.1
875,645 - 16068 mRNA_7700 0.42 -0.8
875,757 - 16068 mRNA_7700 0.49 0.0
875,757 - 16068 mRNA_7700 0.49 -1.2
875,901 - 16068 mRNA_7700 0.58 1.8
875,917 + 16068 mRNA_7700 0.59 -0.2
876,064 - 16068 mRNA_7700 0.68 0.7
876,225 + 16068 mRNA_7700 0.77 1.9
876,339 + 16068 mRNA_7700 0.84 0.5
876,481 - 0.1
876,495 + 0.3
876,517 + 0.6
876,524 - 0.1
876,564 - 0.4
876,641 - 2.5
876,661 + 0.6
876,669 + 0.6
876,761 - 0.5
876,809 - 0.7
876,823 + 1.2
876,824 + 0.4
876,839 + -1.4
876,839 + -2.1
876,940 + -0.8
876,942 - -1.4
876,946 - -2.7
876,946 - -0.3
876,948 - -0.1
876,950 - 1.3
876,950 - -0.4
876,951 + 0.2
876,960 - -1.3
876,961 - 0.2
876,994 - 0.3
877,009 + 0.4
877,020 + -0.1
877,035 + 0.5
877,099 + 0.0
877,113 - -1.3
877,121 + 0.3
877,137 + 1.1
877,145 - 0.2
877,151 - 0.1
877,152 + 0.3
877,173 + 0.0
877,249 - -0.2
877,259 + -0.0
877,319 + 1.3
877,379 - 0.2
877,401 + -0.5
877,409 + 0.6
877,415 - -1.1
877,546 + 16069 mRNA_7701 0.11 1.4