Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7690

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7689: 16057 - BLAST triacylglycerol lipase [Pochonia chlamydosporia 170], at 844796 to 845727 16057 mRNA_7690: 16058 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 846247 to 848747 16058 mRNA_7691: 16059 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 849187 to 849939 16059

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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845,281 + 16057 mRNA_7689 0.52 1.2
845,370 - 16057 mRNA_7689 0.62 2.3
845,373 - 16057 mRNA_7689 0.62 -0.5
845,510 - 16057 mRNA_7689 0.77 0.8
845,586 + 16057 mRNA_7689 0.85 -2.0
845,696 + -1.5
845,704 + 1.1
845,713 - 0.3
845,728 + -0.1
845,826 + -2.2
845,864 + -0.3
845,871 - 0.1
845,878 + -0.8
845,966 - 0.5
845,997 + -0.8
845,998 - -0.2
846,005 - 0.2
846,020 + 1.3
846,038 - -0.3
846,299 + -0.2
846,386 - 1.1
846,498 - 16058 mRNA_7690 0.10 -0.5
846,666 - 16058 mRNA_7690 0.17 -0.2
846,677 + 16058 mRNA_7690 0.17 0.7
846,854 - 16058 mRNA_7690 0.24 0.7
846,854 - 16058 mRNA_7690 0.24 -1.9
846,854 - 16058 mRNA_7690 0.24 -1.9
846,870 + 16058 mRNA_7690 0.25 1.1
846,873 + 16058 mRNA_7690 0.25 0.5
847,023 + 16058 mRNA_7690 0.31 -0.1
847,177 + 16058 mRNA_7690 0.37 1.0
847,183 + 16058 mRNA_7690 0.37 -1.1
847,331 + 16058 mRNA_7690 0.43 1.7
847,641 - 16058 mRNA_7690 0.56 -1.7
847,747 - 16058 mRNA_7690 0.60 -1.6
847,755 - 16058 mRNA_7690 0.60 -0.9
847,811 + 16058 mRNA_7690 0.63 -1.4
847,899 + 16058 mRNA_7690 0.66 -0.1
847,912 - 16058 mRNA_7690 0.67 -0.2
848,233 - 16058 mRNA_7690 0.79 -0.2
848,233 + 16058 mRNA_7690 0.79 0.7
848,330 - 16058 mRNA_7690 0.83 -1.3
848,336 - 16058 mRNA_7690 0.84 1.0
848,511 - 0.6
848,515 + -1.4
848,520 - 0.8
848,631 - 0.0
848,643 + -0.7
848,652 - -0.7
848,755 + 0.2
848,786 - 2.0
848,909 + -0.8
848,936 - 0.6
848,981 + -0.1
849,129 - -0.4
849,137 - 0.1
849,242 - -0.3
849,341 - 16059 mRNA_7691 0.20 0.7
849,385 - 16059 mRNA_7691 0.26 0.9
849,394 - 16059 mRNA_7691 0.27 -0.5
849,399 - 16059 mRNA_7691 0.28 0.1
849,471 + 16059 mRNA_7691 0.38 0.9
849,506 + 16059 mRNA_7691 0.42 -0.3
849,506 - 16059 mRNA_7691 0.42 -0.7
849,594 + 16059 mRNA_7691 0.54 -1.1