Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7624

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7623: 15991 - K19564 CTR, HNM1 choline transport protein, at 704159 to 706103 15991 mRNA_7624: 15992 - KOG1535 Predicted fumarylacetoacetate hydralase, at 706730 to 707973 15992 mRNA_7625: 15993 - HMMPfam-Hypoxia induced protein conserved region-PF04588,ProSiteProfiles-HIG1 domain profile.-PS51503, at 708151 to 709093 15993

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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705,994 - -1.4
706,018 - -1.2
706,023 + -0.6
706,024 - 0.4
706,308 - 0.6
706,311 - 0.8
706,332 - -1.0
706,456 - -2.3
706,470 + -0.4
706,476 + -0.3
706,479 - -1.0
706,481 - 0.5
706,617 - -0.1
706,631 - 0.1
706,789 + -0.2
706,813 - -0.3
706,966 + 15992 mRNA_7624 0.19 -1.8
707,152 + 15992 mRNA_7624 0.34 -1.6
707,158 + 15992 mRNA_7624 0.34 -0.4
707,250 + 15992 mRNA_7624 0.42 1.1
707,278 + 15992 mRNA_7624 0.44 -0.4
707,406 + 15992 mRNA_7624 0.54 -0.2
707,724 + 15992 mRNA_7624 0.80 -0.5
707,785 - 15992 mRNA_7624 0.85 -0.5
707,837 + 15992 mRNA_7624 0.89 0.9
707,848 - 15992 mRNA_7624 0.90 -0.2
707,905 + 0.3
707,980 - -1.8
707,994 - -1.8
707,996 + 1.1
707,997 + -0.4
708,002 - 0.2
708,026 - -0.0
708,057 - 0.5
708,130 - 0.3
708,135 + -0.6
708,136 - 0.8
708,465 + 15993 mRNA_7625 0.33 -0.7
708,581 + 15993 mRNA_7625 0.46 -0.2
708,689 + 15993 mRNA_7625 0.57 -1.9
708,757 - 15993 mRNA_7625 0.64 -0.0
708,849 - 15993 mRNA_7625 0.74 1.4
708,853 - 15993 mRNA_7625 0.74 -0.1
708,869 - 15993 mRNA_7625 0.76 3.1
708,883 - 15993 mRNA_7625 0.78 1.7
708,895 + 15993 mRNA_7625 0.79 0.8
708,898 + 15993 mRNA_7625 0.79 -0.7