Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7556

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7555: 15923 - K00463 IDO, INDO indoleamine 2,3-dioxygenase, at 552807 to 554579 15923 mRNA_7556: 15924 - K12734 PPIL3 peptidyl-prolyl cis-trans isomerase-like 3, at 554930 to 556179 15924 mRNA_7557: 15925 - Hypothetical Protein, at 556281 to 558919 15925

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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554,056 - 15923 mRNA_7555 0.70 -0.1
554,195 - 15923 mRNA_7555 0.78 3.4
554,231 + 15923 mRNA_7555 0.80 -1.3
554,501 - -1.5
554,503 - 0.4
554,648 + -0.6
554,655 - -1.2
554,671 - -0.8
554,777 + 2.5
554,799 + 0.3
554,812 - -0.4
554,819 + -1.0
554,819 + 0.3
554,822 - 0.3
554,832 + -0.4
554,851 + -0.8
554,997 - -0.9
555,257 - 15924 mRNA_7556 0.26 -0.3
555,421 + 15924 mRNA_7556 0.39 0.0
555,695 - 15924 mRNA_7556 0.61 0.5
556,003 + 15924 mRNA_7556 0.86 -0.6
556,285 + 0.5
556,291 - -0.5
556,299 + -1.6
556,435 - 0.2
556,481 + -0.4
557,157 + 15925 mRNA_7557 0.33 -1.8