Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7553

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7552: 15920 - K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3, at 546828 to 547296 15920 mRNA_7553: 15921 - KOG4558 Uncharacterized conserved protein, at 547720 to 548858 15921 mRNA_7554: 15922 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 548985 to 552468 15922

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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546,741 + -1.5
546,868 - -0.9
546,877 - 15920 mRNA_7552 0.10 0.3
547,464 - -1.8
547,583 + -0.6
547,584 - -0.5
547,584 - 0.6
547,585 - 0.4
547,589 + -2.4
547,610 + -0.0
547,611 + -0.2
547,613 + 0.4
547,692 - -1.3
547,698 + -1.7
547,699 - 0.2
547,702 - -0.5
547,703 - 2.2
547,708 - 0.1
547,710 - -0.7
547,714 - 0.3
547,720 - -0.9
547,728 + -1.1
547,731 - -3.0
547,854 - 15921 mRNA_7553 0.12 -0.3
547,870 + 15921 mRNA_7553 0.13 -0.5
548,002 - 15921 mRNA_7553 0.25 -0.2
548,005 - 15921 mRNA_7553 0.25 -2.3
548,006 + 15921 mRNA_7553 0.25 -1.2
548,022 + 15921 mRNA_7553 0.27 1.8
548,472 + 15921 mRNA_7553 0.66 0.7
548,509 - 15921 mRNA_7553 0.69 0.4
548,888 - -1.0
549,301 + -0.1