Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7552

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7551: 15919 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 542848 to 546528 15919 mRNA_7552: 15920 - K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3, at 546828 to 547296 15920 mRNA_7553: 15921 - KOG4558 Uncharacterized conserved protein, at 547720 to 548858 15921

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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546,002 - 15919 mRNA_7551 0.86 -0.3
546,120 - 15919 mRNA_7551 0.89 -0.6
546,135 - 15919 mRNA_7551 0.89 -2.6
546,148 + 15919 mRNA_7551 0.90 -0.5
546,238 + -0.3
546,282 + 1.5
546,741 + -1.5
546,868 - -0.9
546,877 - 15920 mRNA_7552 0.10 0.3
547,464 - -1.8
547,583 + -0.6
547,584 - -0.5
547,584 - 0.6
547,585 - 0.4
547,589 + -2.4
547,610 + -0.0
547,611 + -0.2
547,613 + 0.4
547,692 - -1.3
547,698 + -1.7
547,699 - 0.2
547,702 - -0.5
547,703 - 2.2
547,708 - 0.1
547,710 - -0.7
547,714 - 0.3
547,720 - -0.9
547,728 + -1.1
547,731 - -3.0
547,854 - 15921 mRNA_7553 0.12 -0.3
547,870 + 15921 mRNA_7553 0.13 -0.5
548,002 - 15921 mRNA_7553 0.25 -0.2
548,005 - 15921 mRNA_7553 0.25 -2.3
548,006 + 15921 mRNA_7553 0.25 -1.2
548,022 + 15921 mRNA_7553 0.27 1.8