Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7543

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7542: 15910 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 526059 to 527753 15910 mRNA_7543: 15911 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 528025 to 529460 15911 mRNA_7544: 15912 - K07552 bcr MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein, at 529753 to 531940 15912

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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527,125 - 15910 mRNA_7542 0.63 1.0
527,132 - 15910 mRNA_7542 0.63 1.3
527,700 + -1.2
528,416 - 15911 mRNA_7543 0.27 -0.2
528,425 - 15911 mRNA_7543 0.28 -1.5
529,006 - 15911 mRNA_7543 0.68 2.4
529,283 + 15911 mRNA_7543 0.88 0.3
529,310 - 15911 mRNA_7543 0.89 0.3
529,405 + 1.0
529,446 + -0.0
529,554 + 0.3
529,570 + 0.9
529,582 - -1.3
529,592 - -0.2
529,593 - -0.5
529,650 - 0.4
529,653 - 1.0
529,653 - 0.1
529,656 + -0.8
529,663 - -0.1
529,666 + 0.8
529,668 + 1.2
529,673 + 1.1
529,679 - -2.3
529,686 - 0.2
529,690 - -0.2
529,694 - 0.7
529,695 - 0.5
529,698 + 2.8
529,705 - 0.0
529,705 + -0.6
529,720 - -0.6
529,852 + 0.9
530,143 + 15912 mRNA_7544 0.18 1.3
530,144 + 15912 mRNA_7544 0.18 1.8
530,281 - 15912 mRNA_7544 0.24 0.9
530,422 + 15912 mRNA_7544 0.31 -0.4