Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7517

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7516: 15884 - HMMPfam-Protoglobin-PF11563, at 475785 to 476732 15884 mRNA_7517: 15885 - Hypothetical Protein, at 476971 to 478237 15885 mRNA_7518: 15886 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 478378 to 480820 15886

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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476,631 - 15884 mRNA_7516 0.89 0.8
476,649 - -0.6
476,740 - -0.6
476,767 + -0.5
476,796 + -2.3
476,855 - 1.5
476,855 - 0.2
476,859 - 1.3
476,863 + -2.4
476,894 + -1.2
476,977 - -0.0
476,986 - -1.7
476,999 - -0.5
477,028 + -2.1
477,036 + 0.6
477,117 - 15885 mRNA_7517 0.12 -0.1
477,125 + 15885 mRNA_7517 0.12 -0.6
477,136 - 15885 mRNA_7517 0.13 -0.2
477,140 - 15885 mRNA_7517 0.13 -2.2
477,141 - 15885 mRNA_7517 0.13 0.9
477,141 - 15885 mRNA_7517 0.13 -0.4
477,149 + 15885 mRNA_7517 0.14 1.3
477,152 - 15885 mRNA_7517 0.14 -0.7
477,156 - 15885 mRNA_7517 0.15 0.2
477,158 - 15885 mRNA_7517 0.15 -1.3
477,167 + 15885 mRNA_7517 0.15 0.5
477,171 - 15885 mRNA_7517 0.16 -0.0
477,189 + 15885 mRNA_7517 0.17 -0.3
477,210 + 15885 mRNA_7517 0.19 -0.4
477,216 - 15885 mRNA_7517 0.19 0.5
477,367 + 15885 mRNA_7517 0.31 -0.6
477,471 - 15885 mRNA_7517 0.39 -1.3
478,343 + -0.3
478,383 + 1.0
478,415 + -0.4
478,513 + -0.5
478,518 + -1.2
478,550 - -0.9
478,565 + -0.5
478,572 + 0.3
478,572 + 0.6
478,578 - -1.5
478,582 + 0.3
478,704 + 15886 mRNA_7518 0.13 -0.2
478,714 - 15886 mRNA_7518 0.14 1.3
478,727 + 15886 mRNA_7518 0.14 0.0
478,734 + 15886 mRNA_7518 0.15 1.1
478,742 + 15886 mRNA_7518 0.15 -0.0
478,886 + 15886 mRNA_7518 0.21 0.9
479,028 + 15886 mRNA_7518 0.27 0.9