Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7484

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7484: 15852 - K09565 PPIF peptidyl-prolyl isomerase F (cyclophilin D), at 392851 to 393989 15852 mRNA_7485: 15853 - K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein, at 394901 to 397101 15853

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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391,865 - -0.3
392,052 + -1.5
392,080 - 1.9
392,182 - 0.5
392,193 - -1.9
392,209 - 2.0
392,356 + -0.2
392,604 + -0.9
392,639 - -0.1
392,781 + 1.3
392,912 + 3.1
393,246 - 15852 mRNA_7484 0.35 2.7
393,660 - 15852 mRNA_7484 0.71 -1.3
393,660 - 15852 mRNA_7484 0.71 -0.3
393,690 - 15852 mRNA_7484 0.74 -0.3
393,812 + 15852 mRNA_7484 0.84 1.9
393,815 + 15852 mRNA_7484 0.85 -0.8
393,828 + 15852 mRNA_7484 0.86 -1.0
393,833 + 15852 mRNA_7484 0.86 -1.3
393,966 - -1.8
393,982 + 0.5
393,983 - 0.2
393,984 + -0.2
393,988 + 0.2
394,000 + -2.6
394,114 - -0.7
394,116 - -0.5
394,134 + -0.0
394,139 + -0.2
394,154 + -0.3
394,262 - 1.1
394,264 - 0.1
394,283 - -1.0
394,285 - -2.8
394,299 - -0.2
394,302 - -0.3
394,306 + -0.2
394,310 + -0.1
394,313 + 0.3
394,324 + -1.6
394,435 + -0.6
394,473 + -0.5
394,598 + 0.4
394,602 + 0.4
394,620 + -1.2
394,891 + 3.0
394,898 + -0.3