Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7439

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7438: 15806 - K01455 E3.5.1.49 formamidase, at 278765 to 280421 15806 mRNA_7439: 15807 - K20989 DUR3 urea-proton symporter, at 281348 to 284451 15807 mRNA_7440: 15808 - KOG0537 Cytochrome b5, at 284692 to 285285 15808

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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280,496 + -0.2
280,520 - 1.3
280,526 + -0.3
280,526 + -0.7
280,548 - 1.5
280,548 - 0.7
280,644 - 1.4
280,654 - -1.0
280,655 - -0.7
280,662 + -0.5
280,677 + 1.2
280,798 + 0.7
280,812 + 0.0
280,815 - 0.6
280,824 - -1.0
280,827 - 0.1
281,684 - 15807 mRNA_7439 0.11 -0.5
281,717 + 15807 mRNA_7439 0.12 0.6
281,867 + 15807 mRNA_7439 0.17 -0.3
282,003 - 15807 mRNA_7439 0.21 0.7
282,194 + 15807 mRNA_7439 0.27 0.3
282,301 + 15807 mRNA_7439 0.31 0.5
283,031 - 15807 mRNA_7439 0.54 0.9
283,482 - 15807 mRNA_7439 0.69 -0.2
283,584 - 15807 mRNA_7439 0.72 2.7
283,749 + 15807 mRNA_7439 0.77 -1.5
283,891 - 15807 mRNA_7439 0.82 -1.0
283,926 - 15807 mRNA_7439 0.83 0.1
284,024 + 15807 mRNA_7439 0.86 -0.3
284,195 + -0.2
284,355 - -0.6
284,588 + 0.3
284,618 - 0.6
284,646 + 0.3
284,779 + 15808 mRNA_7440 0.15 -3.0
284,909 - 15808 mRNA_7440 0.37 -2.6
285,022 + 15808 mRNA_7440 0.56 -0.3
285,047 + 15808 mRNA_7440 0.60 0.4
285,059 + 15808 mRNA_7440 0.62 0.7
285,127 - 15808 mRNA_7440 0.73 -2.2
285,188 + 15808 mRNA_7440 0.84 0.8
285,197 - 15808 mRNA_7440 0.85 1.3
285,210 + 15808 mRNA_7440 0.87 0.9
285,221 - 15808 mRNA_7440 0.89 -0.1
285,230 + 2.1
285,348 - 0.0
285,354 + 0.1
285,357 - -0.2
285,357 - -1.5
285,358 - 0.8
285,367 + 0.1
285,376 + 1.2
285,385 + -0.0
285,388 + 1.6
285,400 - -1.1