Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7430

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252711 to 255477 15797 mRNA_7430: 15798 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 256122 to 258039 15798 mRNA_7431: 15799 - K12396 AP3D AP-3 complex subunit delta, at 258369 to 261553 15799

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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255,443 + -1.7
255,528 - -0.4
255,532 + 1.0
255,564 - 1.8
255,570 + -0.9
255,571 - -0.0
255,574 + -1.2
255,574 + 0.3
255,586 + -0.4
255,704 - -0.4
255,723 - -2.0
255,884 + -1.6
255,892 - 2.2
255,992 - -0.4
256,033 - -1.0
256,044 + 0.1
256,047 - 0.5
256,178 + 0.1
256,587 - 15798 mRNA_7430 0.24 0.3
256,600 + 15798 mRNA_7430 0.25 -0.3
256,722 + 15798 mRNA_7430 0.31 -1.1
257,145 + 15798 mRNA_7430 0.53 0.5
257,299 - 15798 mRNA_7430 0.61 -0.6
257,328 + 15798 mRNA_7430 0.63 0.2
257,594 + 15798 mRNA_7430 0.77 -1.3
257,756 + 15798 mRNA_7430 0.85 -0.9
258,072 + -0.2
258,183 - -2.8
258,490 - -1.4