Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7416

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7415: 15783 - K00623 CHAT choline O-acetyltransferase, at 224669 to 227280 15783 mRNA_7416: 15784 - Hypothetical Protein, at 227635 to 230239 15784 mRNA_7417: 15785 - K03353 APC6, CDC16 anaphase-promoting complex subunit 6, at 230745 to 233451 15785

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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227,264 - 0.7
227,281 - -1.3
227,401 + 0.3
227,413 - -0.1
227,426 - 0.1
227,427 + -0.6
227,540 - 0.3
227,581 + -0.2
227,726 + -1.2
229,880 - 15784 mRNA_7416 0.86 0.0
230,042 + -0.5
230,047 + -1.1
230,178 - 0.3
230,185 + 1.0
230,468 - 0.9
230,477 - 0.3
230,478 - 0.8
230,489 + 1.1
230,491 - 0.1
230,499 - -1.1
230,779 - -0.8
231,080 - 15785 mRNA_7417 0.12 0.2