Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7398

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7397: 15765 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 181138 to 183665 15765 mRNA_7398: 15766 - KOG0266 WD40 repeat-containing protein, at 184149 to 185888 15766 mRNA_7399: 15767 - K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family, at 186172 to 187240 15767

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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183,174 - 15765 mRNA_7397 0.81 -1.5
183,181 - 15765 mRNA_7397 0.81 -0.3
183,301 - 15765 mRNA_7397 0.86 0.9
183,314 - 15765 mRNA_7397 0.86 0.6
183,447 + -0.9
183,742 + -0.9
183,780 + -0.8
183,892 - -0.7
183,901 + 1.6
183,903 - 1.1
183,905 - -0.2
183,907 - -1.9
183,907 - 1.4
183,929 + 0.1
183,940 + 0.1
183,944 - 0.2
183,951 - -0.7
183,959 - -0.2
183,993 + 0.7
183,993 - -0.6
183,995 + 1.5
184,003 - -1.4
184,003 + 0.1
184,007 - 0.0
184,008 + -0.4
184,054 + 1.7
184,066 - -0.4
184,078 + -2.9
184,078 + -1.2
184,189 - 1.5
184,221 - 0.8
184,348 - 15766 mRNA_7398 0.11 -0.7
184,358 + 15766 mRNA_7398 0.12 0.3
184,360 - 15766 mRNA_7398 0.12 0.0
184,569 + 15766 mRNA_7398 0.24 -0.0
184,776 + 15766 mRNA_7398 0.36 1.6
184,777 - 15766 mRNA_7398 0.36 0.2
184,797 + 15766 mRNA_7398 0.37 -0.2
184,979 + 15766 mRNA_7398 0.48 0.3
185,523 + 15766 mRNA_7398 0.79 -2.0
185,529 - 15766 mRNA_7398 0.79 0.5
185,655 + 15766 mRNA_7398 0.87 0.6
185,960 - 1.8