Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7345

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7344: 15712 - K01697 E4.2.1.22, CBS cystathionine beta-synthase, at 46801 to 48602 15712 mRNA_7345: 15713 - K00264 GLT1 glutamate synthase (NADPH/NADH), at 49119 to 56418 15713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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48,306 + 15712 mRNA_7344 0.84 -0.0
48,340 - 15712 mRNA_7344 0.85 -0.8
48,514 - 1.7
48,656 - 1.5
48,657 - 0.6
48,658 - -0.7
48,659 + 0.3
48,665 - -0.7
48,670 + 1.3
48,673 + -0.1
48,682 + -0.7
48,686 - -1.1
48,691 + 0.0
48,695 + -1.1
48,785 - 0.7
48,809 - 0.3
48,810 - 0.4
48,812 - 0.7
48,834 - 1.0
48,857 - 2.1
48,869 - 1.0
48,871 - -1.6
48,877 - 0.3
48,891 + 1.1
48,892 - 0.5
48,948 - 0.5
49,009 - -0.0
49,086 + -0.8
49,113 - -0.4
49,193 + 1.2
49,449 - 1.0
49,679 + 0.3
49,704 + 0.7
49,812 + -0.7
50,053 - 15713 mRNA_7345 0.13 0.1
50,127 - 15713 mRNA_7345 0.14 1.2
50,301 - 15713 mRNA_7345 0.16 1.5
50,312 + 15713 mRNA_7345 0.16 -0.1
50,390 - 15713 mRNA_7345 0.17 0.3
50,843 + 15713 mRNA_7345 0.24 -0.8
50,894 - 15713 mRNA_7345 0.24 -0.1
50,915 + 15713 mRNA_7345 0.25 1.0
50,941 - 15713 mRNA_7345 0.25 -1.1
51,223 + 15713 mRNA_7345 0.29 -0.5
51,441 - 15713 mRNA_7345 0.32 -0.5
51,801 - 15713 mRNA_7345 0.37 0.1
51,849 + 15713 mRNA_7345 0.37 -2.5
51,884 + 15713 mRNA_7345 0.38 0.9
51,912 + 15713 mRNA_7345 0.38 -2.6
52,138 - 15713 mRNA_7345 0.41 -2.3
52,148 + 15713 mRNA_7345 0.41 0.5
52,148 + 15713 mRNA_7345 0.41 -0.4
52,187 - 15713 mRNA_7345 0.42 -2.4
52,265 + 15713 mRNA_7345 0.43 0.4
52,705 + 15713 mRNA_7345 0.49 -1.3
52,726 - 15713 mRNA_7345 0.49 0.1
52,726 - 15713 mRNA_7345 0.49 1.1
52,726 - 15713 mRNA_7345 0.49 0.6
52,777 + 15713 mRNA_7345 0.50 -1.3
52,804 + 15713 mRNA_7345 0.50 0.7
52,904 - 15713 mRNA_7345 0.52 0.5
53,045 - 15713 mRNA_7345 0.54 0.7
53,083 - 15713 mRNA_7345 0.54 0.6
53,148 - 15713 mRNA_7345 0.55 0.6
54,129 - 15713 mRNA_7345 0.69 -0.4
54,246 - 15713 mRNA_7345 0.70 -0.8
54,429 - 15713 mRNA_7345 0.73 -0.3
54,448 + 15713 mRNA_7345 0.73 0.5
54,574 + 15713 mRNA_7345 0.75 0.5
54,789 + 15713 mRNA_7345 0.78 -0.4
54,825 + 15713 mRNA_7345 0.78 0.1
55,326 + 15713 mRNA_7345 0.85 0.1
55,636 + 15713 mRNA_7345 0.89 -0.8
55,636 + 15713 mRNA_7345 0.89 0.6
55,839 - -0.7
55,864 - 0.1
56,023 - -0.3
56,392 - -2.1
56,461 - 0.2
56,600 - 0.7
56,632 + -1.3
56,640 + 1.5
56,648 + 1.5
56,651 + -0.4
56,793 - 0.3
56,794 + -1.1
56,803 + 0.5
56,811 + -0.5
56,817 + 1.7
56,818 - 2.7
56,832 + -0.5
56,845 + 1.3
56,913 - 1.0
56,918 - 1.5
56,938 - -0.9
56,951 + -1.2
56,964 - 2.8
56,976 + -1.6
56,977 + -0.1
56,981 + -1.1
56,985 + 1.3
56,986 + 1.2
56,990 - 0.6
56,991 - 0.3
56,997 + -1.7
57,052 - -0.4
57,055 + -0.9
57,065 + 0.3
57,074 + 1.0
57,079 - -2.0
57,091 - -0.3
57,092 + 0.1
57,096 - 1.1
57,098 - -1.9
57,101 + 0.7
57,101 + -2.5
57,101 + 0.9
57,110 - -0.8
57,120 - 0.1
57,195 + 0.8
57,206 - 0.0
57,219 + -1.7
57,243 + 1.7
57,254 + 0.7
57,260 - 1.6
57,266 + -0.2
57,267 - 0.5
57,268 + 0.9
57,272 - 1.0
57,291 + 1.6
57,347 + 1.0