Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7321

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1943 to 3763 15689 mRNA_7322: 15690 - K14849 RRP1 ribosomal RNA-processing protein 1, at 4422 to 5823 15690

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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945 + 15688 mRNA_7320 0.59 0.5
1,059 + 15688 mRNA_7320 0.67 0.1
1,167 + 15688 mRNA_7320 0.74 -1.4
1,174 + 15688 mRNA_7320 0.75 -0.4
1,182 - 15688 mRNA_7320 0.75 -1.0
1,196 + 15688 mRNA_7320 0.76 0.4
1,218 + 15688 mRNA_7320 0.78 0.2
1,258 + 15688 mRNA_7320 0.81 2.0
1,326 - 15688 mRNA_7320 0.85 -0.7
1,360 + 15688 mRNA_7320 0.88 -0.1
1,366 + 15688 mRNA_7320 0.88 -1.0
1,497 - -0.6
1,518 + -0.3
1,582 + 1.4
1,666 - 1.7
1,675 + 1.5
1,789 - -0.1
1,907 + 3.1
1,929 + -1.6
1,948 + 2.7
2,105 - -1.5
2,297 - 15689 mRNA_7321 0.19 -0.8
2,508 - 15689 mRNA_7321 0.31 0.1
2,521 + 15689 mRNA_7321 0.32 -2.0
2,526 + 15689 mRNA_7321 0.32 -0.7
2,529 - 15689 mRNA_7321 0.32 -0.2
2,529 - 15689 mRNA_7321 0.32 -1.1
2,535 + 15689 mRNA_7321 0.33 1.8
2,537 + 15689 mRNA_7321 0.33 0.7
2,546 + 15689 mRNA_7321 0.33 -0.9
2,548 - 15689 mRNA_7321 0.33 2.6
2,680 + 15689 mRNA_7321 0.40 -0.4
2,682 - 15689 mRNA_7321 0.41 -0.5
2,707 + 15689 mRNA_7321 0.42 -0.6
2,723 - 15689 mRNA_7321 0.43 -1.4
2,723 + 15689 mRNA_7321 0.43 -3.5
2,787 - 15689 mRNA_7321 0.46 -1.4
2,811 - 15689 mRNA_7321 0.48 -0.3
2,857 + 15689 mRNA_7321 0.50 0.6
2,870 + 15689 mRNA_7321 0.51 1.7
2,884 + 15689 mRNA_7321 0.52 -0.9
2,924 + 15689 mRNA_7321 0.54 -0.9
2,973 + 15689 mRNA_7321 0.57 0.5
2,988 + 15689 mRNA_7321 0.57 -0.7
2,988 + 15689 mRNA_7321 0.57 -0.1
2,988 - 15689 mRNA_7321 0.57 1.2
2,991 - 15689 mRNA_7321 0.58 -0.2
3,008 + 15689 mRNA_7321 0.58 -1.0
3,020 + 15689 mRNA_7321 0.59 -1.3
3,146 + 15689 mRNA_7321 0.66 2.3
3,273 - 15689 mRNA_7321 0.73 0.1
3,366 + 15689 mRNA_7321 0.78 0.3
3,391 + 15689 mRNA_7321 0.80 -1.0
3,397 + 15689 mRNA_7321 0.80 0.2
3,407 - 15689 mRNA_7321 0.80 0.2
3,458 + 15689 mRNA_7321 0.83 -1.2
3,461 + 15689 mRNA_7321 0.83 -0.9
3,499 + 15689 mRNA_7321 0.85 -0.5
3,517 + 15689 mRNA_7321 0.86 0.1
3,520 + 15689 mRNA_7321 0.87 -0.9
3,523 + 15689 mRNA_7321 0.87 0.2
3,564 + 15689 mRNA_7321 0.89 0.4
3,645 - 0.9
3,732 + 1.6
3,815 + 0.0
3,862 - 1.3
3,864 - 1.1
3,919 - -0.9
3,939 + 2.3
3,945 - 0.2
3,951 + -1.2
3,964 + 1.3
3,971 + 1.0
3,971 + -1.2
3,971 - -0.1
3,979 - 1.4
3,985 - -0.6
3,986 + -0.3
4,018 - -2.1
4,041 - -0.8
4,042 + 0.2
4,046 - 2.7
4,055 - 0.4
4,058 + 0.7
4,059 + -0.9
4,061 - 2.5
4,072 + -2.1
4,080 - 0.3
4,092 - 2.0
4,117 + -1.0
4,138 - -0.9
4,151 + -0.1
4,156 + 0.9
4,178 + 0.7
4,316 + -0.2
4,320 + -0.0
4,339 + 1.4
4,343 - -0.8