Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7205

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7204: 15572 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1118397 to 1120170 15572 mRNA_7205: 15573 - Hypothetical Protein, at 1120664 to 1121084 15573 mRNA_7206: 15574 - BLAST checkpoint 9-1-1 complex, HUS1 component [Moesziomyce..., at 1121305 to 1122113 15574

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,119,820 + 15572 mRNA_7204 0.80 -1.6
1,119,924 + 15572 mRNA_7204 0.86 -0.2
1,120,039 - 1.5
1,120,055 - -1.7
1,120,060 - -0.6
1,120,071 - -0.9
1,120,104 + 0.1
1,120,224 + -0.4
1,120,228 - -0.1
1,120,229 + -0.9
1,120,234 + 0.9
1,120,237 + -0.6
1,120,258 + -0.1
1,120,363 + -0.6
1,120,421 + -0.1
1,120,479 + 0.7
1,120,484 + 0.2
1,120,506 - -2.4
1,120,516 + -0.1
1,120,569 + 1.2
1,120,582 - -0.4
1,120,584 + -0.4
1,120,828 + 15573 mRNA_7205 0.39 0.4
1,120,835 + 15573 mRNA_7205 0.41 2.2
1,120,838 + 15573 mRNA_7205 0.41 -0.9
1,120,864 + 15573 mRNA_7205 0.48 0.0
1,120,926 - 15573 mRNA_7205 0.62 -0.7
1,120,968 - 15573 mRNA_7205 0.72 0.8
1,120,969 - 15573 mRNA_7205 0.72 -1.7
1,120,970 + 15573 mRNA_7205 0.73 -0.1
1,120,980 + 15573 mRNA_7205 0.75 1.6
1,121,002 + 15573 mRNA_7205 0.80 -1.6
1,121,050 + -0.2
1,121,103 + -0.7
1,121,104 + 0.3
1,121,116 - -0.6
1,121,137 + -2.6
1,121,141 + 0.9
1,121,152 + -2.4
1,121,153 - -0.2
1,121,153 - -0.4
1,121,154 - -0.4
1,121,166 - 1.5
1,121,170 - -2.8
1,121,174 - 0.1
1,121,175 - -0.1
1,121,175 - -1.4
1,121,181 - -0.6
1,121,183 + 1.4
1,121,183 + -2.7
1,121,197 + 2.6
1,121,200 + 0.4
1,121,208 + -1.8
1,121,214 + 0.1
1,121,220 - -1.0
1,121,313 - 0.4
1,121,343 + -0.4
1,121,405 + 15574 mRNA_7206 0.12 0.7
1,121,412 - 15574 mRNA_7206 0.13 -0.4
1,121,543 + 15574 mRNA_7206 0.29 -0.1
1,121,813 - 15574 mRNA_7206 0.63 0.5