Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7185

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7184: 15552 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 1072312 to 1073593 15552 mRNA_7185: 15553 - K07300 chaA, CAX Ca2+-H+ antiporter, at 1073734 to 1075504 15553 mRNA_7186: 15554 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 1076175 to 1077434 15554

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,072,826 + 15552 mRNA_7184 0.40 1.3
1,072,995 + 15552 mRNA_7184 0.53 -0.3
1,073,070 + 15552 mRNA_7184 0.59 -1.4
1,073,276 + 15552 mRNA_7184 0.75 0.9
1,073,280 - 15552 mRNA_7184 0.76 1.0
1,073,412 - 15552 mRNA_7184 0.86 -0.5
1,073,443 - 15552 mRNA_7184 0.88 0.8
1,073,583 - 0.9
1,073,783 + 0.9
1,073,852 - -0.3
1,073,996 + 15553 mRNA_7185 0.15 -3.4
1,074,298 - 15553 mRNA_7185 0.32 0.7
1,075,124 - 15553 mRNA_7185 0.78 1.0
1,075,129 + 15553 mRNA_7185 0.79 -0.4
1,075,145 - 15553 mRNA_7185 0.80 -3.0
1,075,714 - 0.4
1,075,717 + -0.8
1,075,751 - 1.5
1,075,774 - -0.7
1,075,867 - -1.5
1,075,886 + -0.9
1,076,020 - 2.5
1,076,028 - 0.1
1,076,029 - -1.2
1,076,043 + -0.2
1,076,045 - -1.5
1,076,048 - -0.5
1,076,055 - -1.6
1,076,056 + 2.3
1,076,056 - 0.7
1,076,090 - -1.9
1,076,110 + -0.7
1,076,133 - 0.5
1,076,197 - -0.3
1,076,210 - -0.5
1,076,241 + 1.0
1,076,478 - 15554 mRNA_7186 0.24 0.4
1,076,485 + 15554 mRNA_7186 0.25 -1.3
1,076,487 - 15554 mRNA_7186 0.25 -1.9