Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7184

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7183: 15551 - Hypothetical Protein, at 1068155 to 1071791 15551 mRNA_7184: 15552 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 1072312 to 1073593 15552 mRNA_7185: 15553 - K07300 chaA, CAX Ca2+-H+ antiporter, at 1073734 to 1075504 15553

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,071,481 + 0.7
1,071,485 - -0.7
1,071,487 - -1.9
1,071,669 - 1.4
1,071,673 + -0.1
1,071,823 + -0.4
1,071,828 + -0.7
1,072,094 + 1.2
1,072,112 - -0.2
1,072,119 + 0.5
1,072,252 - 0.6
1,072,255 + -1.4
1,072,262 + 2.1
1,072,446 - 15552 mRNA_7184 0.10 -0.1
1,072,546 - 15552 mRNA_7184 0.18 -0.3
1,072,582 - 15552 mRNA_7184 0.21 0.1
1,072,684 + 15552 mRNA_7184 0.29 0.4
1,072,826 + 15552 mRNA_7184 0.40 1.3
1,072,995 + 15552 mRNA_7184 0.53 -0.3
1,073,070 + 15552 mRNA_7184 0.59 -1.4
1,073,276 + 15552 mRNA_7184 0.75 0.9
1,073,280 - 15552 mRNA_7184 0.76 1.0
1,073,412 - 15552 mRNA_7184 0.86 -0.5
1,073,443 - 15552 mRNA_7184 0.88 0.8
1,073,583 - 0.9
1,073,783 + 0.9
1,073,852 - -0.3
1,073,996 + 15553 mRNA_7185 0.15 -3.4
1,074,298 - 15553 mRNA_7185 0.32 0.7