Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7166

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1031482 to 1033004 15533 mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1033157 to 1035237 15534 mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1035415 to 1036383 15535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,033,017 + -1.1
1,033,039 + -1.2
1,033,079 + -0.2
1,033,080 + -1.1
1,033,094 + -1.9
1,033,096 + -0.4
1,033,107 + -0.9
1,033,200 + -1.0
1,033,213 - -0.6
1,033,217 - -0.7
1,033,231 - 0.4
1,033,239 + 1.2
1,033,239 - 1.3
1,033,246 + 1.2
1,033,246 + -0.5
1,033,250 + 1.4
1,033,251 - 0.0
1,033,276 - -2.2
1,033,410 + 15534 mRNA_7166 0.12 0.2
1,034,011 - 15534 mRNA_7166 0.41 -0.1
1,034,292 - 15534 mRNA_7166 0.55 -0.3
1,034,300 + 15534 mRNA_7166 0.55 0.7
1,034,859 - 15534 mRNA_7166 0.82 -0.7
1,034,859 + 15534 mRNA_7166 0.82 -0.4
1,034,870 + 15534 mRNA_7166 0.82 -1.4
1,035,042 + 1.2
1,035,143 + -0.6
1,035,183 + -0.6
1,035,208 - -0.3
1,035,222 + 0.6
1,035,268 - -0.3
1,035,293 - -0.7
1,035,319 + 0.0
1,035,348 + 0.4
1,035,376 + 1.0
1,035,419 + 0.4
1,035,420 - 0.3
1,035,459 - -0.6
1,035,466 + -0.9
1,035,519 + 15535 mRNA_7167 0.11 -0.6
1,035,570 + 15535 mRNA_7167 0.16 1.0
1,035,644 - 15535 mRNA_7167 0.24 -0.0
1,035,658 + 15535 mRNA_7167 0.25 -0.4
1,035,664 - 15535 mRNA_7167 0.26 0.3
1,035,665 + 15535 mRNA_7167 0.26 0.4
1,035,687 + 15535 mRNA_7167 0.28 -0.9
1,035,737 - 15535 mRNA_7167 0.33 0.8
1,035,887 + 15535 mRNA_7167 0.49 -0.4
1,036,045 + 15535 mRNA_7167 0.65 -2.8
1,036,189 - 15535 mRNA_7167 0.80 0.2